Pairwise Alignments

Query, 725 a.a., TIGR01666 family membrane protein from Vibrio cholerae E7946 ATCC 55056

Subject, 720 a.a., Inner membrane protein YccS from Escherichia coli ECRC62

 Score =  564 bits (1454), Expect = e-165
 Identities = 314/706 (44%), Positives = 433/706 (61%), Gaps = 13/706 (1%)

Query: 11  LRLYWANKTVNYSVLILLTLLGVVIPAWYYQLNTWITPLILGVIAAALADRDDRFSGRLK 70
           L+ Y  N    Y   I + L G     W+        PL LG++AAAL D DDR +GRL+
Sbjct: 9   LKRYTWNSAWLYYARIFIALCGTTAFPWWLGDVKLTIPLTLGMVAAALTDLDDRLAGRLR 68

Query: 71  SIILTLICFAIAAFSIEILFQTPWLFALGLFTSSFGFIMLGAMGARYASIAFASLLVAVY 130
           ++I+TL CF IA+ S+E+LF  PWLFA+GL  S+ GFI+LG +G RYA+IAF +LL+A+Y
Sbjct: 69  NLIITLFCFFIASASVELLFPWPWLFAIGLTLSTSGFILLGGLGQRYATIAFGALLIAIY 128

Query: 131 TMLGAHQSTNIWFQPLLLLSGSAWYYLMSMLWHAFWPMQPVQQNLANVFLQLANYLEAKS 190
           TMLG     + + QP+ LL+G+ WY +++++ H  +P++P+Q NLA  + QLA YLE KS
Sbjct: 129 TMLGTSLYEHWYQQPMYLLAGAVWYNVLTLIGHLLFPVRPLQDNLARCYEQLARYLELKS 188

Query: 191 TLFHPVSNMIPQPHRIIEANLNAATVNALNQCKAVFLTRSKRGHVDSASDRFLNIYFLAQ 250
            +F P      Q      A  N   +  LNQ K   LTR +       + R L+ YF+AQ
Sbjct: 189 RMFDPDIEDESQAPLYDLALANGQLMATLNQTKLSLLTRLRGDRGQRGTRRTLHYYFVAQ 248

Query: 251 DIHERVSSSHYRYQELADHFGRSDILFRFKYLLETQAKACRDIAQSIRLGHSYQHDSASI 310
           DIHER SSSH +YQ L +HF  SD+LFRF+ L+  Q +AC+ +++ I L   YQHD    
Sbjct: 249 DIHERASSSHIQYQTLREHFRHSDVLFRFQRLMSMQGQACQQLSRCILLRQPYQHDPHFE 308

Query: 311 VALDELQLSLSYLRQQERRDWKSLLGQLGYLFNNLATVEKQLNNVSNPDV-AKP---EEG 366
            A   +  +L  +R         LL  LG+L NNL  ++ QL  + +    A P   +E 
Sbjct: 309 RAFTHIDAALERMRDNGAP--ADLLKTLGFLLNNLRAIDAQLATIESEQAQALPHNNDEN 366

Query: 367 VLDDTEAHTLGSMWQRIRANLNKDSLLFRHALRLSITLTLGYAIIQGFGIERGYWILLTT 426
            L D   H L  +W R+  +   +S LFRHA+R+S+ L  GYAIIQ  G+  GYWILLT+
Sbjct: 367 ELADDSPHGLSDIWLRLSRHFTPESALFRHAVRMSLVLCFGYAIIQITGMHHGYWILLTS 426

Query: 427 LFVCQPNYAATKQKLTARIIGTLAGLLIGVPLLTFFPSQESQLVFIVFSGVMFFAFRLNN 486
           LFVCQPNY AT+ +L  RIIGTL G+ IG+P+L F PS E QLV +V +GV+FFAFR   
Sbjct: 427 LFVCQPNYNATRHRLKLRIIGTLVGIAIGIPVLWFVPSLEGQLVLLVITGVLFFAFRNVQ 486

Query: 487 YGYATGFITLLVLFCFNQLGEGYAVVLPRLADTLIGCALAVAAVVLILPDWQSKRLHKVM 546
           Y +AT FITLLVL CFN LGEG+ V LPR+ DTLIGCA+A AAV  I PDWQ + L +++
Sbjct: 487 YAHATMFITLLVLLCFNLLGEGFEVALPRVIDTLIGCAIAWAAVSYIWPDWQFRNLPRML 546

Query: 547 AEAIDANKQYLAQIIGQYRIGKKDSLSYRIARRHAHNQDAALSAAVTNMLAEPGRYRAAA 606
             A +AN +YL  I+ QY  G+ + L+YRIARR AHN+DA L++ V+NM +EP       
Sbjct: 547 ERATEANCRYLDAILEQYHQGRDNRLAYRIARRDAHNRDAELASVVSNMSSEPNVTPQIR 606

Query: 607 DESFRFLTLNHALLSYISALGAHRTRLDDETVHQLVLDSHRVIHQHLDLLHQQLSNHCEE 666
           + +FR L LNH   SYISALGAHR +L +  +   + D+   +    D LH Q ++  EE
Sbjct: 607 EAAFRLLCLNHTFTSYISALGAHREQLTNPEILAFLDDAVCYVD---DALHHQPAD--EE 661

Query: 667 CDTSGIDSSGLEKRLAEWREDDEGSARMVLQQLHLIYRMLPELHTL 712
                + S  L++R+ +     +    +V+QQ+ L+  +LPE+  L
Sbjct: 662 RVNEALAS--LKQRMQQLEPRADSKEPLVVQQVGLLIALLPEIGRL 705