Pairwise Alignments

Query, 687 a.a., DNA helicase IV from Vibrio cholerae E7946 ATCC 55056

Subject, 660 a.a., UvrD-helicase domain-containing protein from Rhodanobacter sp000427505 FW510-R12

 Score =  104 bits (259), Expect = 2e-26
 Identities = 98/346 (28%), Positives = 148/346 (42%), Gaps = 60/346 (17%)

Query: 200 LNVSQQYAVLLNDDHNLVLAGAGSGKTSVLTARVSYLLQSHLAKPEQILLVAFARDAAQE 259
           LN  Q  AV   D   LVLAGAGSGKTSV+T +++YL+Q       +I  + F   AA+E
Sbjct: 2   LNPQQLAAVEHCDTPLLVLAGAGSGKTSVITQKIAYLIQRRKLAASKIAAITFTNKAARE 61

Query: 260 MAERLKNKIGLE-AERLHINTFHQLGLRIINRVEGKTVIMSPLANDSKLKQAWCIDWLKR 318
           M ER+   I  E A  L ++TFH LGL+ +     +          + L++ + +     
Sbjct: 62  MRERVAKLISSEDAAALTVSTFHALGLKFLQIEHAR----------AGLRRGFSV----- 106

Query: 319 HWMTPTNFKRWQKHLAKWPIAYLAGDD------ELGSHVENPKLIAWLEKQLDQLAQMGL 372
                                 L  DD      EL      P ++  L   L +    GL
Sbjct: 107 ----------------------LDADDSEGIVKELAPKGAKPDVLFGLRNLLSRAKNGGL 144

Query: 373 SKKELQERLVDHDDYPRLNSELSLCWPCYQAWQQMLKDQNQIDFNIMITRATEYVE---- 428
           S +E            R   EL      Y+ +Q  L   N +DF+ +I      +E    
Sbjct: 145 SPEEALAA-------ARSPRELEAA-TIYELYQARLATFNAVDFDDLIRLPLRILESDDE 196

Query: 429 -KGKFRSPWKFIMVDEYQDISPQRLRLLQALCEQNQGQCNLFAVGDDWQSIYQFAGSDVD 487
            +  +R   ++++VDEYQD +  + RLL+ L  +   + ++  VGDD QSIY + G++ +
Sbjct: 197 CRDAWRERLRYLLVDEYQDTNDAQYRLLKVLAGE---RGHITCVGDDDQSIYAWRGANPE 253

Query: 488 LTTGFASRFAHSTVHHLDTTYRFNDQIGAVANRFIQQNPHQLPKTL 533
                   + +  V  L+  YR   +I   AN  I  NPH   K L
Sbjct: 254 NIDQLGRDWPNLRVIKLEQNYRCGRRILRAANALIAHNPHSHEKKL 299



 Score = 43.5 bits (101), Expect = 3e-08
 Identities = 32/94 (34%), Positives = 45/94 (47%), Gaps = 22/94 (23%)

Query: 598 MTCHASKGKEADYVIILAVDEGQFPARVKALHLDDALNQSEDDFPYAEERRLFYVALTRA 657
           MT HA+KG E  +V I   ++G  P        + AL++   D    EERRL YV +TRA
Sbjct: 545 MTLHAAKGLEFRFVFIAGCEDGTLPH-------EGALDEGRVD----EERRLMYVGITRA 593

Query: 658 KEKVWVT-----------YNGNGSSFVQELLNDD 680
           KE + ++           +N   S F+ EL   D
Sbjct: 594 KELLTLSWSAKTKRYGEVHNNQPSRFLHELPQAD 627