Pairwise Alignments

Query, 687 a.a., DNA helicase IV from Vibrio cholerae E7946 ATCC 55056

Subject, 771 a.a., UvrD-helicase domain-containing protein from Rhodanobacter sp000427505 FW510-R12

 Score =  115 bits (288), Expect = 8e-30
 Identities = 106/361 (29%), Positives = 158/361 (43%), Gaps = 59/361 (16%)

Query: 199 PLNVSQQYAVLLNDDHNLVLAGAGSGKTSVLTARVSYLLQSHLAKPEQILLVAFARDAAQ 258
           PLN +Q+ AV     H LVLAGAGSGKT VLT R+ +L Q+    P  IL V F   AA 
Sbjct: 9   PLNAAQREAVCAPPGHYLVLAGAGSGKTRVLTHRIGWLTQAERVPPWAILAVTFTNKAAG 68

Query: 259 EMAERLKNKIGLEAERLHINTFHQLGLRIINRVEGKTVIMSPLANDSKLKQAWCIDWLKR 318
           EM  RL+  I    + L + TFH +  R+                            L+R
Sbjct: 69  EMRARLEALIPGGTQGLTVGTFHGIAHRL----------------------------LRR 100

Query: 319 HWM---TPTNFKRW----QKHLAKWPIAYLAGDDELGSHVENPKLIAWLEKQLDQLAQMG 371
           HW     P  F+      Q  L K  IA L  DD        P+   W   Q++     G
Sbjct: 101 HWREAGLPEAFQILDADDQLRLVKRVIAGLGLDDAKFP----PRQACW---QINNWKDEG 153

Query: 372 LSKKELQERLVDHDDYPRLNSELSLCWPCYQAWQQMLKDQNQIDFNIMITRATEYVEK-- 429
                 +   ++H ++P   + + +    YQA++   +    +DF  ++ RA E   K  
Sbjct: 154 -----KRPDAIEHREHPVTQTFVRI----YQAYEDACRRAGLVDFAELLLRAHELWLKNP 204

Query: 430 ---GKFRSPWKFIMVDEYQDISPQRLRLLQALCEQNQGQCNLFAVGDDWQSIYQFAGSDV 486
                ++  W++++VDE+QD +  +   ++ L   N GQ  +F VGDD Q+IY + G+ V
Sbjct: 205 AVLAHYQQRWRYLLVDEFQDTNTLQYAWIRVLA-GNTGQ--VFVVGDDDQAIYGWRGAKV 261

Query: 487 DLTTGFASRFAHSTVHHLDTTYRFNDQIGAVANRFIQQNPHQLPKTLNSFKTQKQKAVML 546
           +    F   F  +    L+  YR    I   AN  IQ+N  +L K L +     Q+  + 
Sbjct: 262 ENVQQFLRDFPGARTIKLEQNYRSTSTILKAANSVIQRNGSRLGKQLWTAGEDGQRIALY 321

Query: 547 A 547
           A
Sbjct: 322 A 322



 Score = 49.7 bits (117), Expect = 5e-10
 Identities = 26/71 (36%), Positives = 42/71 (59%), Gaps = 10/71 (14%)

Query: 595 LDFMTCHASKGKEADYVIILAVDEGQFPARVKALHLDDALNQSEDDFPYAEERRLFYVAL 654
           +  MT H++KG E   V ++ ++EG FP++            +ED+    EERRL YV +
Sbjct: 603 VQLMTLHSAKGLEFPLVFLVGMEEGLFPSQ----------RSTEDEGRLEEERRLAYVGI 652

Query: 655 TRAKEKVWVTY 665
           TRA+E++ VT+
Sbjct: 653 TRARERLVVTH 663



 Score = 27.7 bits (60), Expect = 0.002
 Identities = 31/100 (31%), Positives = 47/100 (47%), Gaps = 10/100 (10%)

Query: 118 LKRLPSFLSHSSVEAWVAQVYA-DLKLMDMTLHEAQ-KHLPTVF-----DTLLP---WLL 167
           L  L +FLSH+++EA   Q  A D  +  MTLH A+    P VF     + L P      
Sbjct: 577 LSELSAFLSHATLEAGENQGEAWDDCVQLMTLHSAKGLEFPLVFLVGMEEGLFPSQRSTE 636

Query: 168 DTSATLYERNKAWLEIERANWTVLFSQCESSPLNVSQQYA 207
           D      ER  A++ I RA   ++ +  ES  ++ ++  A
Sbjct: 637 DEGRLEEERRLAYVGITRARERLVVTHAESRRMHGTEMLA 676