Pairwise Alignments

Query, 687 a.a., DNA helicase IV from Vibrio cholerae E7946 ATCC 55056

Subject, 804 a.a., ATP-dependent DNA helicase PcrA from Xanthobacter sp. DMC5

 Score =  129 bits (324), Expect = 5e-34
 Identities = 116/415 (27%), Positives = 193/415 (46%), Gaps = 60/415 (14%)

Query: 198 SPLNVSQQYAVLLNDDHNLVLAGAGSGKTSVLTARVSYLLQSHLAKPEQILLVAFARDAA 257
           S LN  Q+ AV   +   LVLAGAG+GKT VLTARV+++L S  A P QIL+V F   AA
Sbjct: 31  SGLNPEQREAVETLEGPLLVLAGAGTGKTRVLTARVAHILASGRAFPSQILVVTFTNKAA 90

Query: 258 QEMAERLKNKIGLEAERL-HINTFHQLGLRIINR---VEGKTVIMSPLANDSKLKQAWCI 313
           +EM +R+   +G + E +  + TFH +G+RI+ R   + G     + L  D +++     
Sbjct: 91  REMKDRIHGMVGDQIEGMPWLGTFHSIGVRILRRHHELVGLKSGFTILDTDDQIR----- 145

Query: 314 DWLKRHWMTPTNFKRWQKHLAKWPIAYLAGDDELGSHVENPKLIAWLEKQLDQLAQMGLS 373
             L +  +   N         +WP   LA                     +D     GLS
Sbjct: 146 --LLKQLLAAENIDE-----KRWPARLLAA-------------------TIDGWKNRGLS 179

Query: 374 KKELQERLVDHDDYPRLNSELSLCWPCYQAWQQMLKDQNQIDFNIMITRATEYVEK---- 429
            K++       +     N +  + +  YQA    LK  N +DF  ++        +    
Sbjct: 180 PKDVP----PGEGAVFANGKGGMLYAAYQA---RLKALNAVDFGDLLLEGIRLFRENPDV 232

Query: 430 -GKFRSPWKFIMVDEYQDISPQRLRLLQALCEQNQGQCNLFAVGDDWQSIYQFAGSDVDL 488
             ++   +K+++VDEYQD +  +   L+ L    QG  N+  VGDD QSIY + G++VD 
Sbjct: 233 LAEYHRRFKYLLVDEYQDTNVAQYLWLRLLA---QGSKNVCCVGDDDQSIYGWRGAEVDN 289

Query: 489 TTGFASRFAHSTVHHLDTTYRFNDQIGAVANRFIQQNPHQLPKTLNSFKTQKQKAVMLAP 548
              F S F  + V  L+  YR    I A A   I  N  +L KTL S   + ++  +   
Sbjct: 290 ILRFESDFPGAKVIRLERNYRSTGHILASAAHLIAHNEGRLGKTLFSEGDEGERVSVTGA 349

Query: 549 NHSVEKI------LDEINRSTNKLKTVLLLGRNHYHKPELLKDWQNRYLSLKLDF 597
             S E+       ++ + R+ ++L  + +L R  +     ++++++R+++L + +
Sbjct: 350 WDSGEEARAVGEEIEALQRAGHRLSEIAILVRASFQ----MREFEDRFVTLGMPY 400



 Score = 39.3 bits (90), Expect = 7e-07
 Identities = 31/91 (34%), Positives = 44/91 (48%), Gaps = 14/91 (15%)

Query: 598 MTCHASKGKEADYVIILAVDEGQFPARVKALHLDDALNQSEDDFPYAEERRLFYVALTRA 657
           MT H++KG E D V +   +EG FP + +AL         +      EERRL YV +TRA
Sbjct: 573 MTLHSAKGLEFDTVFLPGWEEGLFPHQ-RAL-------DEQGKAGLEEERRLAYVGITRA 624

Query: 658 K--EKVWVTYN----GNGSSFVQELLNDDYP 682
           +   ++W   N    G  +S V     D+ P
Sbjct: 625 RASARIWFASNRRIHGMWNSTVPSRFLDELP 655



 Score = 26.9 bits (58), Expect = 0.004
 Identities = 26/77 (33%), Positives = 34/77 (44%), Gaps = 6/77 (7%)

Query: 113 QELSRLKRLPSFLSHSSVEAWVAQVYADLKLMDMTLHEAQ-KHLPTVFDTLLPW---LLD 168
           + +   + LP FL H S+   V     +  +  MTLH A+     TVF  L  W   L  
Sbjct: 540 RSMEPFESLPGFLEHISLVMDVDNGAGEDAVQVMTLHSAKGLEFDTVF--LPGWEEGLFP 597

Query: 169 TSATLYERNKAWLEIER 185
               L E+ KA LE ER
Sbjct: 598 HQRALDEQGKAGLEEER 614