Pairwise Alignments

Query, 687 a.a., DNA helicase IV from Vibrio cholerae E7946 ATCC 55056

Subject, 669 a.a., ATP-dependent DNA helicase Rep from Pseudomonas simiae WCS417

 Score = 99.0 bits (245), Expect = 7e-25
 Identities = 99/345 (28%), Positives = 152/345 (44%), Gaps = 53/345 (15%)

Query: 198 SPLNVSQQYAVLLNDDHNLVLAGAGSGKTSVLTARVSYLLQSHLAKPEQILLVAFARDAA 257
           S LN  QQ AV       LVLAGAGSGKTSV+T ++++L+Q    + + I+ + F   AA
Sbjct: 2   SRLNPRQQEAVNYVGGPLLVLAGAGSGKTSVITRKIAHLIQQCGIRAQYIVAMTFTNKAA 61

Query: 258 QEMAERLKNKI-GLEAERLHINTFHQLGLRIINRVEGKTVIMSPLANDSKLKQAWCIDWL 316
           +EM ER+   + G E   L + TFH LGL II +   +             K  + I   
Sbjct: 62  REMKERVGTLLKGGEGRGLTVCTFHNLGLNIIRKEHARL----------GYKPGFSI--- 108

Query: 317 KRHWMTPTNFKRWQKHLAKWPIAYLAGDDELGSHVENPKLIAWLEKQL--DQLAQMGLSK 374
                  T+ K     + +   A   G DE+ + +      AW    +   Q  +   + 
Sbjct: 109 ----FDETDVKSLMTDIMQKEYAGDDGVDEIKNMIG-----AWKNDLILPAQALENARNP 159

Query: 375 KELQERLVDHDDYPRLNSELSLCWPCYQAWQQMLKDQNQIDFNIMITRATEYVEK----- 429
           KE    +V                  Y  +Q+ LK  N +DF+ +I    +  E+     
Sbjct: 160 KEQTAAIV------------------YTHYQRTLKAFNAVDFDDLILLPVKLFEEHADIL 201

Query: 430 GKFRSPWKFIMVDEYQDISPQRLRLLQALCEQNQGQCNLF-AVGDDWQSIYQFAGSDVDL 488
            K+++  ++++VDEYQD +  +  L++ L     G+ N F  VGDD QSIY + G+  + 
Sbjct: 202 EKWQNKVRYLLVDEYQDTNASQYLLVKMLI----GKRNQFTVVGDDDQSIYAWRGARPEN 257

Query: 489 TTGFASRFAHSTVHHLDTTYRFNDQIGAVANRFIQQNPHQLPKTL 533
                  +    V  L+  YR   +I   AN  I  NPH+  K L
Sbjct: 258 LMLLKDDYPSLKVVMLEQNYRSTSRILRCANVLISNNPHEFEKQL 302



 Score = 42.0 bits (97), Expect = 9e-08
 Identities = 26/71 (36%), Positives = 36/71 (50%), Gaps = 11/71 (15%)

Query: 595 LDFMTCHASKGKEADYVIILAVDEGQFPARVKALHLDDALNQSEDDFPYAEERRLFYVAL 654
           +  MT HASKG E  YV I+ ++E   P R            S +     EERRL YV +
Sbjct: 553 VQMMTLHASKGLEFPYVFIMGMEEEILPHR-----------SSIEADTIEEERRLAYVGI 601

Query: 655 TRAKEKVWVTY 665
           TRA++ +  T+
Sbjct: 602 TRARQTLAFTF 612