Pairwise Alignments

Query, 687 a.a., DNA helicase IV from Vibrio cholerae E7946 ATCC 55056

Subject, 700 a.a., ATP-dependent DNA helicase Rep from Variovorax sp. SCN45

 Score =  111 bits (277), Expect = 1e-28
 Identities = 103/344 (29%), Positives = 162/344 (47%), Gaps = 49/344 (14%)

Query: 197 SSPLNVSQQYAVLLNDDHNLVLAGAGSGKTSVLTARVSYLLQSHLAKPEQILLVAFARDA 256
           S  LN +Q  AV       LVLAGAGSGKT V+T ++  L+QS L +P++I  + F   A
Sbjct: 2   SHGLNPAQLEAVNYMYGPCLVLAGAGSGKTRVITHKIGRLIQSGL-EPQRIAAITFTNKA 60

Query: 257 AQEMAERLKNKIGLEAERLHINTFHQLGLRIINRVEGKTVIMSPLANDSKLKQAWCIDWL 316
           A EM ER K+ IG +A ++ + TFH LG+R++ R +G  +          LK+A+ I   
Sbjct: 61  AAEMRERAKDLIGKDARKVVVCTFHALGVRMM-REDGAVL---------GLKKAFSI--- 107

Query: 317 KRHWMTPTNFKRWQKHLAKWPIAYLAGDDELGSHVENPKLIAWLEKQLDQLAQMGLSKKE 376
                           L    +  +  D    + +   ++  W    + +   MGL+ K+
Sbjct: 108 ----------------LDSDDVTKILKDAGGTTDIATARIWQW---TISKWKNMGLNAKQ 148

Query: 377 LQERLVDHDDYPRLNSELSLCWPCYQAWQQMLKDQNQIDFNIMITRATEYV-EKGKFRSP 435
            +   V  DD  R+ + +         +++ L+    +DF+ +I    + + E  + R+ 
Sbjct: 149 AEAAAV--DDNERITARI------MAHYEERLQAYQSVDFDDLIGMPLKLLYEFPEVRAK 200

Query: 436 WK----FIMVDEYQDISPQRLRLLQALCEQNQGQCNLFAVGDDWQSIYQFAGSDVDLTTG 491
           W+     I+VDEYQD +  +  +L+AL  +   + +  AVGDD QSIY + G+ +D    
Sbjct: 201 WQAALGHILVDEYQDTNATQYEVLKALAGE---RGHFTAVGDDDQSIYGWRGATLDNLRK 257

Query: 492 FASRFAHSTVHHLDTTYRFNDQIGAVANRFIQQNPHQLPKTLNS 535
               F    V  L+  YR    I   AN  I  NP   PKTL S
Sbjct: 258 LPVDFPTLKVIKLEQNYRSTSAILRAANNVIGPNPKLFPKTLFS 301



 Score = 42.7 bits (99), Expect = 6e-08
 Identities = 29/71 (40%), Positives = 40/71 (56%), Gaps = 8/71 (11%)

Query: 599 TCHASKGKEADYVIILAVDEGQFPARVKALHLDDALNQ---SEDDFP-YAEERRLFYVAL 654
           T HASKG E  +V+++ V EG  P ++     DD   Q   SED      EERRL YV +
Sbjct: 573 TLHASKGLEWPHVMLIGVSEGLLPFKLD----DDNGRQQKVSEDTLQRLQEERRLMYVGI 628

Query: 655 TRAKEKVWVTY 665
           TRA+  + V++
Sbjct: 629 TRAQRSLAVSW 639