Pairwise Alignments

Query, 687 a.a., DNA helicase IV from Vibrio cholerae E7946 ATCC 55056

Subject, 813 a.a., ATP-dependent DNA helicase UvrD/PcrA (EC 3.6.4.12) from Variovorax sp. SCN45

 Score = 95.5 bits (236), Expect = 9e-24
 Identities = 97/355 (27%), Positives = 146/355 (41%), Gaps = 64/355 (18%)

Query: 200 LNVSQQYAVLLNDDHNLVLAGAGSGKTSVLTARVSYLLQSHLAKPEQILLVAFARDAAQE 259
           LN  Q  AV L   + L+LAGAGSGKT VLT R+++LLQ+       IL V F   AA+E
Sbjct: 24  LNAEQLAAVTLPAGNALILAGAGSGKTRVLTTRIAWLLQTGQVSAGGILAVTFTNKAAKE 83

Query: 260 MAERLKNKIGLEAERLHINTFHQLGLRIINRVEGKTVIMSPLANDSKLKQAWCIDWLKRH 319
           M  RL   + +    + I TFH L                            C   L+ H
Sbjct: 84  MMTRLTAILPVNVRGMWIGTFHGL----------------------------CNRLLRAH 115

Query: 320 WM---TPTNFK----RWQKHLAKWPIAYLAGDDELGSHVENPKLIAWLEKQLDQLAQMGL 372
           W     P+ F+    + Q    K  +     DDE     +    IA  ++        GL
Sbjct: 116 WKLANLPSTFQILDTQDQLSAIKRLMKQFNVDDERFPAKQTQWFIAGAKED-------GL 168

Query: 373 SKKELQERLVDHDDYPRLNSELSLCWPCYQAWQQMLKDQNQIDFNIMITRATEYVE---- 428
              +++ R     D  R   EL      YQ +++  + +  +DF  ++ R+ E +     
Sbjct: 169 RPGDIEVR----SDDDRKKVEL------YQLYEEQCQREGVVDFGELMLRSYELLRDNAP 218

Query: 429 -KGKFRSPWKFIMVDEYQDISPQRLRLLQALCEQNQG-------QCNLFAVGDDWQSIYQ 480
            +  ++  ++ I++DE+QD +  +   ++ L     G         ++ AVGDD QSIY 
Sbjct: 219 VREHYQRRFRHILIDEFQDTNRLQYAWIKMLAGNTVGGQFEPGRDNSVIAVGDDDQSIYA 278

Query: 481 FAGSDVDLTTGFASRFAHSTVHHLDTTYRFNDQIGAVANRFIQQNPHQLPKTLNS 535
           F G+ V   T F   F       L+  YR    I   AN  I  N  +L K L +
Sbjct: 279 FRGARVGNMTDFVREFDVRHQIKLEQNYRSYSNILDSANELISHNKKRLGKNLRT 333



 Score = 50.1 bits (118), Expect = 4e-10
 Identities = 27/72 (37%), Positives = 41/72 (56%), Gaps = 10/72 (13%)

Query: 595 LDFMTCHASKGKEADYVIILAVDEGQFPARVKALHLDDALNQSEDDFPYAEERRLFYVAL 654
           +  MT HA+KG E D V I  ++EG FP            N   D     EERRL YVA+
Sbjct: 608 VQLMTVHAAKGLEFDCVFITGMEEGLFPHE----------NSMSDFESLEEERRLMYVAI 657

Query: 655 TRAKEKVWVTYN 666
           TRA+++++++++
Sbjct: 658 TRARKRLYLSHS 669