Pairwise Alignments

Query, 687 a.a., DNA helicase IV from Vibrio cholerae E7946 ATCC 55056

Subject, 758 a.a., ATP-dependent DNA helicase UvrD/PcrA (EC 3.6.4.12) from Sphingobium sp. HT1-2

 Score =  119 bits (297), Expect = 7e-31
 Identities = 109/413 (26%), Positives = 189/413 (45%), Gaps = 60/413 (14%)

Query: 200 LNVSQQYAVLLNDDHNLVLAGAGSGKTSVLTARVSYLLQSHLAKPEQILLVAFARDAAQE 259
           LN  Q+ AVL  +   LVLAGAG+GKT+ LTAR+++L+ +  A P +IL V F   AA+E
Sbjct: 17  LNEPQREAVLTTEGPVLVLAGAGTGKTAALTARLAHLVATQRAWPSEILAVTFTNKAARE 76

Query: 260 MAERLKNKIGLEAERL-HINTFHQLGLRIINR---VEGKTVIMSPLANDSKLKQAWCIDW 315
           M ER+   IG   E +  + TFH +  +++ R   + G     + L  D +L+       
Sbjct: 77  MRERVGRMIGPAVEGMPWLGTFHAIAAKMLRRHAELVGLQSNFTILDTDDQLR------- 129

Query: 316 LKRHWMTPTNFKRWQKHLAKWPIAYLAGDDELGSHVENPKLIAWLEKQLDQLAQMGLSKK 375
           L +  +             +WP   LAG                    +DQ    GL+ +
Sbjct: 130 LMKQLIQAEGIDE-----KRWPARQLAG-------------------LIDQWKNKGLTPE 165

Query: 376 ELQERLVDHDDYPRLNSELSLCWPCYQAWQQMLKDQNQIDFNIMITRATEYVEKGK---- 431
           E+     + + Y     +       Y A+Q  L++ N  DF  ++  +   +++ +    
Sbjct: 166 EVGAG--EAEGYAHGKGQ-----KLYAAYQARLREVNACDFGDLLLHSLTILKRHRDVLE 218

Query: 432 -FRSPWKFIMVDEYQDISPQRLRLLQALCEQNQGQCNLFAVGDDWQSIYQFAGSDVDLTT 490
            ++  +K+IMVDEYQD +  +   L+ L +  +   N+  VGDD QSIY + G++V    
Sbjct: 219 QYQQRFKYIMVDEYQDTNSSQYLWLRLLAQTRK---NICCVGDDDQSIYSWRGAEVANIL 275

Query: 491 GFASRFAHSTVHHLDTTYRFNDQIGAVANRFIQQNPHQLPKTLNSFKTQKQKAVMLAPNH 550
            F   F  + +  L+  YR    I   A+  I +N ++L KTL +     +K  +L    
Sbjct: 276 RFEKDFPGAVIVRLEQNYRSTPHILGAASGVIAENGNRLGKTLWTDIDVGEKVRVLGVWD 335

Query: 551 SVEKI------LDEINRSTNKLKTVLLLGRNHYHKPELLKDWQNRYLSLKLDF 597
             E+       ++ I R+   L  V +L R  +      +++++R++ + L +
Sbjct: 336 GPEEARRVGDEIEAIARAGGSLDEVAILVRAQHQ----TREFEDRFIQIGLPY 384



 Score = 51.2 bits (121), Expect = 2e-10
 Identities = 41/113 (36%), Positives = 61/113 (53%), Gaps = 12/113 (10%)

Query: 556 LDEINRSTNKLKTVLLLGRNHYHKPELLKDWQNRYLSLKLDFMTCHASKGKEADYVIILA 615
           L E+ R+  + +T   LG    H   L+ D + +    KL  MT HA+KG E D V +  
Sbjct: 519 LSELTRAMEEYET---LGAFLEHV-SLVMDNEAQQDEQKLTIMTIHAAKGLEFDNVFLAG 574

Query: 616 VDEGQFPARVKALHLDDALNQSEDDFPYAEERRLFYVALTRAKEKVWVTYNGN 668
            +EG FP++ +AL  +  LN  E      EERRL YVA+TRA+++  + +  N
Sbjct: 575 WEEGIFPSQ-RALD-EGGLNSLE------EERRLAYVAITRARKRCTILHAAN 619