Pairwise Alignments

Query, 687 a.a., DNA helicase IV from Vibrio cholerae E7946 ATCC 55056

Subject, 720 a.a., ATP-dependent DNA helicase UvrD/PcrA from Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868

 Score = 90.5 bits (223), Expect = 3e-22
 Identities = 91/342 (26%), Positives = 142/342 (41%), Gaps = 51/342 (14%)

Query: 200 LNVSQQYAVLLNDDHNLVLAGAGSGKTSVLTARVSYLLQSHLAKPEQILLVAFARDAAQE 259
           LN  Q+ AV     + LVLAGAGSGKT VL  R+++LL      P  I+ V F   AA E
Sbjct: 10  LNDKQREAVAAPRSNMLVLAGAGSGKTRVLVHRIAWLLSVENNSPYSIMAVTFTNKAAAE 69

Query: 260 MAERLKNKIGLEAERLHINTFHQLGLRIINRVEGKTVIMSPLANDSKLKQAWCIDWLKRH 319
           M  R+   +G     + + TFH L  R++        + + L  D ++  +     L + 
Sbjct: 70  MRHRIGQLMGTSQGGMWVGTFHGLAHRLLRAHH----MDANLPQDFQILDSEDQMRLLKR 125

Query: 320 WMTPTNF--KRWQKHLAKWPIAYLAGDDELGSHVENPKLIAWLEKQLDQLAQMGLSKKEL 377
            +   N   K+W    A W                      ++  Q D+    GL    +
Sbjct: 126 LIKAMNLDEKQWPPRQAMW----------------------YINSQKDE----GLRPHHI 159

Query: 378 QERLVDHDDYPRLNSELSLCW-PCYQAWQQMLKDQNQIDFNIMITRATE-YVEK----GK 431
           Q             + +   W   YQA+Q+       +DF  ++ RA E ++ K      
Sbjct: 160 QS----------YGNPVEQTWQKVYQAYQEACDRAGLVDFAELLLRAHELWLNKPHILQH 209

Query: 432 FRSPWKFIMVDEYQDISPQRLRLLQALCEQNQGQCNLFAVGDDWQSIYQFAGSDVDLTTG 491
           +R  +  I+VDE+QD +  +   ++ L         +  VGDD QSIY + G+ V+    
Sbjct: 210 YRERFTNILVDEFQDTNNIQYAWVRLLAGDTG---KVMIVGDDDQSIYGWRGAQVENIQR 266

Query: 492 FASRFAHSTVHHLDTTYRFNDQIGAVANRFIQQNPHQLPKTL 533
           F + F  +    L+  YR    I + AN  I+ N  +L K L
Sbjct: 267 FLNDFPGAQTIRLEQNYRSTSNILSAANALIENNNGRLGKKL 308



 Score = 46.6 bits (109), Expect = 4e-09
 Identities = 25/71 (35%), Positives = 40/71 (56%), Gaps = 10/71 (14%)

Query: 595 LDFMTCHASKGKEADYVIILAVDEGQFPARVKALHLDDALNQSEDDFPYAEERRLFYVAL 654
           +  MT H++KG E   V I+ ++EG FP+++            ++     EERRL YV +
Sbjct: 554 VQLMTLHSAKGLEFPQVFIVGMEEGMFPSQMSL----------DEGGRLEEERRLAYVGV 603

Query: 655 TRAKEKVWVTY 665
           TRA +K+ +TY
Sbjct: 604 TRAMQKLTLTY 614