Pairwise Alignments

Query, 687 a.a., DNA helicase IV from Vibrio cholerae E7946 ATCC 55056

Subject, 720 a.a., DNA-dependent ATPase I and helicase II (NCBI) from Escherichia coli BW25113

 Score = 90.9 bits (224), Expect = 2e-22
 Identities = 93/342 (27%), Positives = 137/342 (40%), Gaps = 51/342 (14%)

Query: 200 LNVSQQYAVLLNDDHNLVLAGAGSGKTSVLTARVSYLLQSHLAKPEQILLVAFARDAAQE 259
           LN  Q+ AV     + LVLAGAGSGKT VL  R+++L+      P  I+ V F   AA E
Sbjct: 10  LNDKQREAVAAPRSNLLVLAGAGSGKTRVLVHRIAWLMSVENCSPYSIMAVTFTNKAAAE 69

Query: 260 MAERLKNKIGLEAERLHINTFHQLGLRIINRVEGKTVIMSPLANDSKLKQAWCIDWLKRH 319
           M  R+   +G     + + TFH L  R+                            L+ H
Sbjct: 70  MRHRIGQLMGTSQGGMWVGTFHGLAHRL----------------------------LRAH 101

Query: 320 WM---TPTNFKRWQKHLAKWPIAYLAGDDELGSHVENPKLIAWLEKQLDQLAQMGLSKKE 376
            M    P +F+             L  +D+L       K +   EKQ      M     +
Sbjct: 102 HMDANLPQDFQ------------ILDSEDQLRLLKRLIKAMNLDEKQWPPRQAMWYINSQ 149

Query: 377 LQERLVDHDDYPRLNSELSLCWPCYQAWQQMLKDQNQIDFNIMITRATE-YVEK----GK 431
             E L  H      N         YQA+Q+       +DF  ++ RA E ++ K      
Sbjct: 150 KDEGLRPHHIQSYGNPVEQTWQKVYQAYQEACDRAGLVDFAELLLRAHELWLNKPHILQH 209

Query: 432 FRSPWKFIMVDEYQDISPQRLRLLQALCEQNQGQCNLFAVGDDWQSIYQFAGSDVDLTTG 491
           +R  +  I+VDE+QD +  +   ++ L         +  VGDD QSIY + G+ V+    
Sbjct: 210 YRERFTNILVDEFQDTNNIQYAWIRLLAGDTG---KVMIVGDDDQSIYGWRGAQVENIQR 266

Query: 492 FASRFAHSTVHHLDTTYRFNDQIGAVANRFIQQNPHQLPKTL 533
           F + F  +    L+  YR    I + AN  I+ N  +L K L
Sbjct: 267 FLNDFPGAETIRLEQNYRSTSNILSAANALIENNNGRLGKKL 308



 Score = 46.6 bits (109), Expect = 4e-09
 Identities = 25/71 (35%), Positives = 40/71 (56%), Gaps = 10/71 (14%)

Query: 595 LDFMTCHASKGKEADYVIILAVDEGQFPARVKALHLDDALNQSEDDFPYAEERRLFYVAL 654
           +  MT H++KG E   V I+ ++EG FP+++            ++     EERRL YV +
Sbjct: 554 VQLMTLHSAKGLEFPQVFIVGMEEGMFPSQMSL----------DEGGRLEEERRLAYVGV 603

Query: 655 TRAKEKVWVTY 665
           TRA +K+ +TY
Sbjct: 604 TRAMQKLTLTY 614



 Score = 25.4 bits (54), Expect = 0.010
 Identities = 31/107 (28%), Positives = 49/107 (45%), Gaps = 12/107 (11%)

Query: 111 WQQELSRLKRLPSFLSHSSVEAWVAQ--VYADLKLMDMTLHEAQ-KHLPTVF-----DTL 162
           + +E   L  L +FLSH+++EA   Q   + D   + MTLH A+    P VF     + +
Sbjct: 521 YNEEDEDLMPLQAFLSHAALEAGEGQADTWQDAVQL-MTLHSAKGLEFPQVFIVGMEEGM 579

Query: 163 LP--WLLDTSATL-YERNKAWLEIERANWTVLFSQCESSPLNVSQQY 206
            P    LD    L  ER  A++ + RA   +  +  E+  L   + Y
Sbjct: 580 FPSQMSLDEGGRLEEERRLAYVGVTRAMQKLTLTYAETRRLYGKEVY 626