Pairwise Alignments

Query, 687 a.a., DNA helicase IV from Vibrio cholerae E7946 ATCC 55056

Subject, 688 a.a., ATP-dependent DNA helicase Rep (EC 3.6.1.-) from Kangiella aquimarina DSM 16071

 Score =  107 bits (266), Expect = 2e-27
 Identities = 107/379 (28%), Positives = 169/379 (44%), Gaps = 51/379 (13%)

Query: 191 LFSQCESSPLNVSQQYAVLLNDDHNLVLAGAGSGKTSVLTARVSYLLQSHLAKPEQILLV 250
           LF+      LN  Q+ A+L      LVLAGAGSGKTSV+T ++ YL++        I+ V
Sbjct: 11  LFAALSLPQLNEKQREALLATQGPLLVLAGAGSGKTSVITRKMVYLIKEKQIPARNIVAV 70

Query: 251 AFARDAAQEMAERLKNKIGLEA-ERLHINTFHQLGLRIINRVEGKTVIMSPLANDSKLKQ 309
            F   AA+EM +R+    G  A + L ++TFH  GL  I R   K  + S   N +    
Sbjct: 71  TFTNKAAREMKQRVSKLAGSNATQGLTVSTFHNFGLNFIRREYKKLGMKS---NFTIFDD 127

Query: 310 AWCIDWLKRHWMTPTNFKRWQKHLAKWPIAYLAGDDELGSHVENPKLIAWLEKQLDQLAQ 369
              +  LK        FK  +             D +L   ++  ++ AW    +  L +
Sbjct: 128 QDTLALLK-----DLGFKEAE------------SDKQLLFRLQQ-QISAWKNDLI--LPE 167

Query: 370 MGLSKKELQERLVDHDDYPRLNSELSLCWPCYQAWQQMLKDQNQIDFNIMITRATEYVE- 428
             +++ + QE+L+                  Y+ + + +K  N +DF+ +I   T  +  
Sbjct: 168 QAINQVKDQEQLIFS--------------KVYEKYARSMKAYNAVDFDDLILIPTLLLRD 213

Query: 429 ----KGKFRSPWKFIMVDEYQDISPQRLRLLQALCEQNQGQCNLF-AVGDDWQSIYQFAG 483
               + K+++  ++++VDEYQD +  +  L++ L     GQ   F  VGDD QSIY + G
Sbjct: 214 DPEVREKWQNKIRYLLVDEYQDTNTSQYELIKHLV----GQFGSFTVVGDDDQSIYSWRG 269

Query: 484 SDVDLTTGFASRFAHSTVHHLDTTYRFNDQIGAVANRFIQQNPHQLPKTLNSFKTQKQK- 542
           +  +     A  + +  V  L+  YR   +I   AN  I  NPH   K L S K      
Sbjct: 270 ARPENLDQLAKDYPNLQVIKLEQNYRSYGRILKAANVLIDNNPHVFEKKLWSDKPYGDPL 329

Query: 543 AVMLAPNH--SVEKILDEI 559
            V+  PN     EK++ EI
Sbjct: 330 KVVTCPNEDAEAEKVVTEI 348



 Score = 38.9 bits (89), Expect = 8e-07
 Identities = 39/147 (26%), Positives = 62/147 (42%), Gaps = 39/147 (26%)

Query: 552 VEKILDEINRSTNKLKTVL-------LLGRNHYHKPELLKDWQNRYLSLKLDFMTCHASK 604
           VEK +D+     N     +       +L RN   + E          S ++  MT HA+K
Sbjct: 531 VEKGIDDNEHDPNPFAAAVANLMLRDMLDRNEKEEEE----------SNEVQLMTLHAAK 580

Query: 605 GKEADYVIILAVDEGQFPARVKALHLDDALNQSEDDFPYAEERRLFYVALTRAKEKVWVT 664
           G E ++V ++ ++E +F     ++  DD            EERRL YV +TRA++ +  T
Sbjct: 581 GLEFNHVYLVGMEE-EFLPHKSSIENDD----------IEEERRLAYVGITRAQQTLTFT 629

Query: 665 YNGNGSS-----------FVQELLNDD 680
                S            F++EL  DD
Sbjct: 630 LCKKRSKYGEVMACEPSRFLEELPQDD 656