Pairwise Alignments

Query, 687 a.a., DNA helicase IV from Vibrio cholerae E7946 ATCC 55056

Subject, 726 a.a., Superfamily I DNA and RNA helicases from Kangiella aquimarina DSM 16071

 Score =  102 bits (255), Expect = 5e-26
 Identities = 98/369 (26%), Positives = 158/369 (42%), Gaps = 61/369 (16%)

Query: 199 PLNVSQQYAVLLNDDHNLVLAGAGSGKTSVLTARVSYLLQSHLAKPEQILLVAFARDAAQ 258
           PLN +Q+ AV   +   LVLAGAGSGKT VL  R+++L+Q        IL V F   AA+
Sbjct: 9   PLNDAQKEAVTAPNKALLVLAGAGSGKTRVLVHRIAWLVQVERVSAHSILAVTFTNKAAK 68

Query: 259 EMAERLKNKIGLEAERLHINTFHQLGLRIINRVEGKTVIMSPLANDSKLKQAWCI----D 314
           EM  R+++ + + A  + I TFH +  R++               D+ L + + I    D
Sbjct: 69  EMLGRVEDMLAMPARGMWIGTFHSIAHRLLR----------AHYRDAGLPEGFQILDAQD 118

Query: 315 WLKRHWMTPTNFKRWQKHL----AKWPIAYLAGDDELGSHVENPKLIAWLEKQLDQLAQM 370
            L+         KR  K L     +WP                PK   W    ++     
Sbjct: 119 QLR-------VIKRVMKELNLDDNEWP----------------PKQAQWF---INAKKDD 152

Query: 371 GLSKKELQERLVDHDDYPRLNSELSLCWPCYQAWQQMLKDQNQIDFNIMITRATEYVEKG 430
           GL   ++      H D+      +S     Y A+++  K    +DFN ++ RA E     
Sbjct: 153 GLRPGDIHH----HGDF-----FVSTMVKVYYAYEEACKRGGLVDFNELLLRAYELWANN 203

Query: 431 -----KFRSPWKFIMVDEYQDISPQRLRLLQALCEQNQGQCNLFAVGDDWQSIYQFAGSD 485
                 ++  ++ I+VDE+QD +  +   ++ LC  N     +  VGDD QSIY + G+ 
Sbjct: 204 PHLLKHYQDRFQHILVDEFQDTNAIQYAWIRLLCNDNN---RITIVGDDDQSIYGWRGAR 260

Query: 486 VDLTTGFASRFAHSTVHHLDTTYRFNDQIGAVANRFIQQNPHQLPKTLNSFKTQKQKAVM 545
           ++    F   F    V  L+  YR    I   AN  I  N  ++ K+L +   Q +  ++
Sbjct: 261 IENIQQFEKDFPDCKVSRLEQNYRSTSTILKAANAVIANNQDRMGKSLWTEGNQGEPIIL 320

Query: 546 LAPNHSVEK 554
            +  +  E+
Sbjct: 321 YSAFNEQEE 329



 Score = 40.4 bits (93), Expect = 3e-07
 Identities = 23/71 (32%), Positives = 38/71 (53%), Gaps = 10/71 (14%)

Query: 595 LDFMTCHASKGKEADYVIILAVDEGQFPARVKALHLDDALNQSEDDFPYAEERRLFYVAL 654
           +  MT H++KG E   V I  V+E  FP ++            ++     EERRL YV +
Sbjct: 558 VQMMTLHSAKGLEFPLVFIAGVEEKLFPHQMSL----------DEPGGLEEERRLAYVGI 607

Query: 655 TRAKEKVWVTY 665
           TRA +++++T+
Sbjct: 608 TRAMKQLYLTF 618