Pairwise Alignments

Query, 687 a.a., DNA helicase IV from Vibrio cholerae E7946 ATCC 55056

Subject, 684 a.a., Superfamily I DNA and RNA helicases from Enterobacter asburiae PDN3

 Score =  394 bits (1012), Expect = e-114
 Identities = 253/695 (36%), Positives = 378/695 (54%), Gaps = 21/695 (3%)

Query: 1   MQLNANKTAQFFIANEYYQVQLEKEWLVLTSLSSEERIPFHVWNGEVQIRRGVFWGTLQF 60
           M+L A    +    + Y +V L    + ++    E  IPF+     +  +RG+ WG L+F
Sbjct: 1   MELKATSLGKRLAQHPYDRVVLLNAGVKVSGERHEYLIPFNQLLA-IHCKRGLVWGELEF 59

Query: 61  FAHPEEGVQRSWLVQGLPWPECRHFAHQLVAHYQAWHNRQCEQLSLYFPRWQQELSRLKR 120
              P++ V R   + G  W E + F H L A +Q W        +    +   ++++   
Sbjct: 60  VL-PDDKVVR---LHGTEWAETQRFHHHLNALWQQWSQDMSVIAAQVLQQVLDDIAQSNA 115

Query: 121 LPSFLSHSSVEAWVAQVYADLKLMDMTLHEAQK--HLPTVFDTLLPWLLDTSATLYERNK 178
             ++L+         ++   L  +  ++    +  +    +     WL D   +    N+
Sbjct: 116 QHAWLTRQQTAGLQQKIRQALSALPFSVTRLDEFDNCRDAWHQCQAWLNDKDKSRLAHNQ 175

Query: 179 AWLEIERANWTVLFSQCESSPLNVSQQYAVLLNDDHNLVLAGAGSGKTSVLTARVSYLLQ 238
           AW +     +   FS  ESSPLN +Q  AV+  +   LVLAGAGSGKTSVL AR  +LL 
Sbjct: 176 AWTDAMLTQYADFFSTVESSPLNPAQARAVVNGEQSLLVLAGAGSGKTSVLVARAGWLLT 235

Query: 239 SHLAKPEQILLVAFARDAAQEMAERLKNKIGLEAERLHINTFHQLGLRIINRVEGKTVIM 298
           +  A  +QILL+AF R AAQEM ER++ +  L    +   TFH L L II +   K   +
Sbjct: 236 TGEAVADQILLLAFGRKAAQEMDERIQER--LHTRDITARTFHALALHIIQQGSKKVPSI 293

Query: 299 SPLANDSKLKQAWCIDWLKRHWMTPTNFKRWQ-KHLAKWPIAYLAGDDELGSHVENPKLI 357
           S L ND++ +QA  I    + W    + K+ Q K   +W    L+ +   GS  ++ KL 
Sbjct: 294 SKLENDAQARQALFI----KTWRQQCSEKKAQAKGWRQWLEEELSWEVPEGSFWQDDKLA 349

Query: 358 AWLEKQLDQLAQMGLSKKELQERLVDHDDYP---RLNSELSLCWPCYQAWQQMLKDQNQI 414
             L  +LD+   +       Q  +++          +  + L  P  +AW+  LK++N +
Sbjct: 350 RRLGSRLDRWVSLMRMHGGTQAEMIESAPEAIRDLFSKRVKLMAPLLKAWKTALKEENAV 409

Query: 415 DFNIMITRATEYVEKGKFRSPWKFIMVDEYQDISPQRLRLLQALCEQNQGQCNLFAVGDD 474
           DF+ +I +A   +EKG+F SPWK I+VDE+QDISPQR  LL AL  QN+   +LFAVGDD
Sbjct: 410 DFSGLIHQAIIILEKGRFVSPWKHILVDEFQDISPQRAALLSALRAQNK-HTSLFAVGDD 468

Query: 475 WQSIYQFAGSDVDLTTGFASRFAHSTVHHLDTTYRFNDQIGAVANRFIQQNPHQLPKTLN 534
           WQ+IY+F+G+ + LTT F   F       LDTTYRFN +IG +ANRFIQQNPHQL K LN
Sbjct: 469 WQAIYRFSGAQLSLTTAFHHYFGEGERSDLDTTYRFNSRIGEIANRFIQQNPHQLAKPLN 528

Query: 535 SFKTQKQKAVMLAPNHSVEKILDEINRSTNKLKTVLLLGRNHYHKPELLKDWQNRYLSLK 594
           S +   +KAV L  +  +E +LD+++      + +L+L R H+ KP  L+    R+  L+
Sbjct: 529 SLRPGDKKAVTLLADDQLEPLLDKLSGYAKPDERILVLARYHHLKPAALEKAATRWPKLQ 588

Query: 595 LDFMTCHASKGKEADYVIILAVDEGQ--FPARVKALHLDDALNQSEDDFPYAEERRLFYV 652
           L+FMT HASKG++ADYVI++ + EG   FPA  +   +++AL    +DFP AEERRL YV
Sbjct: 589 LEFMTIHASKGQQADYVIVVGLKEGSDGFPAPARESVMEEALLPVPEDFPDAEERRLLYV 648

Query: 653 ALTRAKEKVWVTYN-GNGSSFVQELLNDDYPVVKQ 686
           ALTRA+ +VW+ +N    S+FV  L + D PV ++
Sbjct: 649 ALTRARHRVWLLFNKEEPSAFVDILKSIDVPVARK 683