Pairwise Alignments

Query, 687 a.a., DNA helicase IV from Vibrio cholerae E7946 ATCC 55056

Subject, 673 a.a., DNA helicase Rep from Escherichia coli ECRC62

 Score =  103 bits (256), Expect = 3e-26
 Identities = 112/392 (28%), Positives = 166/392 (42%), Gaps = 56/392 (14%)

Query: 200 LNVSQQYAVLLNDDHNLVLAGAGSGKTSVLTARVSYLLQSHLAKPEQILLVAFARDAAQE 259
           LN  QQ AV       LVLAGAGSGKT V+T ++++L++    +   I  V F   AA+E
Sbjct: 3   LNPGQQQAVEFVTGPCLVLAGAGSGKTRVITNKIAHLIRGCGYQARHIAAVTFTNKAARE 62

Query: 260 MAERLKNKIG-LEAERLHINTFHQLGLRIINRVEGKTVIMSPLANDSKLKQAWCIDWLKR 318
           M ER+   +G  EA  L I+TFH LGL II R   +   +   AN S             
Sbjct: 63  MKERVGQTLGRKEARGLMISTFHTLGLDIIKR---EYAALGMKANFSLFDDT-------- 111

Query: 319 HWMTPTNFKRWQKHLAKWPIAYLAGDDELGSHVENPKLIAWLEKQLDQLAQMGLSKKELQ 378
                      Q  L K     L  DD++        +  W +  L   +Q   S    +
Sbjct: 112 ----------DQLALLKELTEGLIEDDKVLLQQLISTISNW-KNDLKTPSQAAASAIGER 160

Query: 379 ERLVDHDDYPRLNSELSLCWPCYQAWQQMLKDQNQIDFNIMITRATEYVEKG-KFRSPW- 436
           +R+  H               CY  +   LK  N +DF+ +I   T  +++  + R  W 
Sbjct: 161 DRIFAH---------------CYGLYDAHLKACNVLDFDDLILLPTLLLQRNEEVRERWQ 205

Query: 437 ---KFIMVDEYQDISPQRLRLLQALCEQNQGQCNLFAVGDDWQSIYQFAGSDVDLTTGFA 493
              ++++VDEYQD +  +  L++ L      +     VGDD QSIY + G+        +
Sbjct: 206 NKIRYLLVDEYQDTNTSQYELVKLLV---GSRARFTVVGDDDQSIYSWRGARPQNLVLLS 262

Query: 494 SRFAHSTVHHLDTTYRFNDQIGAVANRFIQQNPHQLPKTLNSFKTQKQKAVMLAPN---H 550
             F    V  L+  YR + +I   AN  I  NPH   K L S      +  +L+ N   H
Sbjct: 263 QDFPALKVIKLEQNYRSSGRILKAANILIANNPHVFEKRLFSELGYGTELKVLSANNEEH 322

Query: 551 SVEKILDE------INRSTNKLKTVLLLGRNH 576
             E++  E      +N++  K   +L  G NH
Sbjct: 323 EAERVTGELIAHHFVNKTQYKDYAILYRG-NH 353



 Score = 43.5 bits (101), Expect = 3e-08
 Identities = 26/71 (36%), Positives = 39/71 (54%), Gaps = 11/71 (15%)

Query: 594 KLDFMTCHASKGKEADYVIILAVDEGQFPARVKALHLDDALNQSEDDFPYAEERRLFYVA 653
           ++  MT HASKG E  YV ++ ++EG  P +            S D+    EERRL YV 
Sbjct: 551 QVQLMTLHASKGLEFPYVYMVGMEEGFLPHQ-----------SSIDEDNIDEERRLAYVG 599

Query: 654 LTRAKEKVWVT 664
           +TRA++++  T
Sbjct: 600 ITRAQKELTFT 610