Pairwise Alignments

Query, 687 a.a., DNA helicase IV from Vibrio cholerae E7946 ATCC 55056

Subject, 673 a.a., ATP-dependent DNA helicase Rep from Escherichia fergusonii Becca

 Score =  105 bits (262), Expect = 7e-27
 Identities = 113/394 (28%), Positives = 168/394 (42%), Gaps = 60/394 (15%)

Query: 200 LNVSQQYAVLLNDDHNLVLAGAGSGKTSVLTARVSYLLQSHLAKPEQILLVAFARDAAQE 259
           LN  QQ AV       LVLAGAGSGKT V+T ++++L++    +   I  V F   AA+E
Sbjct: 3   LNPGQQQAVEFVTGPCLVLAGAGSGKTRVITNKIAHLIRGCGYQARHIAAVTFTNKAARE 62

Query: 260 MAERLKNKIG-LEAERLHINTFHQLGLRIINRVEGKTVIMS--PLANDSKLKQAWCIDWL 316
           M ER+   +G  EA  L I+TFH LGL II R      + S   L +D+           
Sbjct: 63  MKERVAQTLGRKEARGLMISTFHTLGLDIIKREYAALGMKSNFSLFDDTD---------- 112

Query: 317 KRHWMTPTNFKRWQKHLAKWPIAYLAGDDELGSHVENPKLIAWLEKQLDQLAQMGLSKKE 376
                        Q  L K     L  DD+L        +  W +  L    Q   S K 
Sbjct: 113 -------------QVALLKELTDGLIEDDKLILQQLISTISNW-KNDLMTPVQAAASAKG 158

Query: 377 LQERLVDHDDYPRLNSELSLCWPCYQAWQQMLKDQNQIDFNIMITRATEYVEKG-KFRSP 435
            ++R+  H               CY  +   +K  N +DF+ +I   T  +++  + R  
Sbjct: 159 ERDRIFAH---------------CYGLYDAHMKACNVLDFDDLILLPTLLLQRNEEVRER 203

Query: 436 W----KFIMVDEYQDISPQRLRLLQALCEQNQGQCNLFAVGDDWQSIYQFAGSDVDLTTG 491
           W    ++++VDEYQD +  +  L++ L  +   +     VGDD QSIY + G+       
Sbjct: 204 WQNKIRYLLVDEYQDTNTSQYELVKLLVGK---RARFTVVGDDDQSIYSWRGARPQNLVL 260

Query: 492 FASRFAHSTVHHLDTTYRFNDQIGAVANRFIQQNPHQLPKTLNSFKTQKQKAVMLAPN-- 549
            +  F    V  L+  YR + +I   AN  I  NPH   K L S      +  +L+ N  
Sbjct: 261 LSKDFPALQVVKLEQNYRSSGRILKAANILIANNPHVFEKRLFSELGYGAELKVLSANNE 320

Query: 550 -HSVEKILDE------INRSTNKLKTVLLLGRNH 576
            H  E++  E      +N++  K   +L  G NH
Sbjct: 321 EHEAERVTGELIAHHFVNKTQYKDYAILYRG-NH 353



 Score = 43.5 bits (101), Expect = 3e-08
 Identities = 26/71 (36%), Positives = 39/71 (54%), Gaps = 11/71 (15%)

Query: 594 KLDFMTCHASKGKEADYVIILAVDEGQFPARVKALHLDDALNQSEDDFPYAEERRLFYVA 653
           ++  MT HASKG E  YV ++ ++EG  P +            S D+    EERRL YV 
Sbjct: 551 QVQLMTLHASKGLEFPYVYMVGMEEGFLPHQ-----------SSIDEDNIDEERRLAYVG 599

Query: 654 LTRAKEKVWVT 664
           +TRA++++  T
Sbjct: 600 ITRAQKELTFT 610