Pairwise Alignments

Query, 687 a.a., DNA helicase IV from Vibrio cholerae E7946 ATCC 55056

Subject, 720 a.a., DNA helicase II from Dickeya dianthicola ME23

 Score = 92.8 bits (229), Expect = 5e-23
 Identities = 95/347 (27%), Positives = 140/347 (40%), Gaps = 61/347 (17%)

Query: 200 LNVSQQYAVLLNDDHNLVLAGAGSGKTSVLTARVSYLLQSHLAKPEQILLVAFARDAAQE 259
           LN  Q+ AV     + LVLAGAGSGKT VL  R+++LL      P  I+ V F   AA E
Sbjct: 10  LNDKQRDAVAAARSNMLVLAGAGSGKTRVLVHRIAWLLTVENCSPYSIMAVTFTNKAAAE 69

Query: 260 MAERLKNKIGLEAERLHINTFHQLGLRIINRVEGKTVIMSPLANDSKLKQAWCIDWLKRH 319
           M  R+   +G     + I TFH L  R++        + + L  D ++  +     L + 
Sbjct: 70  MRHRIDQLLGTGQGGMWIGTFHGLAHRLLRAHH----LDAGLPQDFQILDSEDQLRLLKR 125

Query: 320 WMTPTNF--KRWQKHLAKWPIAYLAGDDELG---SHVE---NPKLIAWLEKQLDQLAQMG 371
            +   N   K+W    A W   Y+ G  + G    H++   NP    WL           
Sbjct: 126 LIKALNLDEKQWPPRQAMW---YINGKKDEGLRPQHIDSYGNPVEQTWLR---------- 172

Query: 372 LSKKELQERLVDHDDYPRLNSELSLCWPCYQAWQQMLKDQNQIDFNIMITRATE-YVEK- 429
                                        YQA+Q+       +DF  ++ RA E ++ K 
Sbjct: 173 ----------------------------IYQAYQEACDRAGLVDFAELLLRAHELWLNKP 204

Query: 430 ---GKFRSPWKFIMVDEYQDISPQRLRLLQALCEQNQGQCNLFAVGDDWQSIYQFAGSDV 486
                +R  +  I+VDE+QD +  +   ++ L         +  VGDD QSIY + G+ V
Sbjct: 205 HILQHYRDRFNNILVDEFQDTNRIQYAWIRLLAGDG---AKVMIVGDDDQSIYGWRGAQV 261

Query: 487 DLTTGFASRFAHSTVHHLDTTYRFNDQIGAVANRFIQQNPHQLPKTL 533
           +    F   F+  T   L+  YR    I   AN  I  N  +L K L
Sbjct: 262 ENIQHFLRDFSDVTTIRLEQNYRSTANILNAANALIAHNGDRLGKNL 308



 Score = 46.2 bits (108), Expect = 5e-09
 Identities = 24/71 (33%), Positives = 40/71 (56%), Gaps = 10/71 (14%)

Query: 595 LDFMTCHASKGKEADYVIILAVDEGQFPARVKALHLDDALNQSEDDFPYAEERRLFYVAL 654
           +  MT H++KG E   V ++ ++EG FP+++            ++     EERRL YV +
Sbjct: 554 VQLMTLHSAKGLEFPQVFVVGMEEGMFPSQMSL----------DEGGRLEEERRLAYVGV 603

Query: 655 TRAKEKVWVTY 665
           TRA +K+ +TY
Sbjct: 604 TRAMQKLTLTY 614



 Score = 29.6 bits (65), Expect = 5e-04
 Identities = 34/107 (31%), Positives = 49/107 (45%), Gaps = 12/107 (11%)

Query: 111 WQQELSRLKRLPSFLSHSSVEAWVAQ--VYADLKLMDMTLHEAQ-KHLPTVF-----DTL 162
           +Q E   L  L +FLSH+++EA   Q   Y D   + MTLH A+    P VF     + +
Sbjct: 521 YQDEDQDLLPLQAFLSHAALEAGEGQADAYQDAVQL-MTLHSAKGLEFPQVFVVGMEEGM 579

Query: 163 LP--WLLDTSATL-YERNKAWLEIERANWTVLFSQCESSPLNVSQQY 206
            P    LD    L  ER  A++ + RA   +  +  ES  L   + Y
Sbjct: 580 FPSQMSLDEGGRLEEERRLAYVGVTRAMQKLTLTYAESRRLYGKETY 626