Pairwise Alignments

Query, 687 a.a., DNA helicase IV from Vibrio cholerae E7946 ATCC 55056

Subject, 674 a.a., DNA helicase Rep from Dickeya dadantii 3937

 Score =  114 bits (284), Expect = 2e-29
 Identities = 103/369 (27%), Positives = 162/369 (43%), Gaps = 49/369 (13%)

Query: 200 LNVSQQYAVLLNDDHNLVLAGAGSGKTSVLTARVSYLLQSHLAKPEQILLVAFARDAAQE 259
           +N SQQ+AV       LVLAGAGSGKT V+T ++++L++    +   I  V F   AA+E
Sbjct: 3   MNPSQQHAVEFVTGPCLVLAGAGSGKTRVITQKIAHLIRGCGYQARHIAAVTFTNKAARE 62

Query: 260 MAERLKNKIGLEAER-LHINTFHQLGLRIINRVEGKTVIMSPLANDSKLKQAWCIDWLKR 318
           M ER+   +G +  R L I TFH LGL II R      + S  +      Q   +  L  
Sbjct: 63  MKERVAQTLGRQETRGLLIATFHTLGLEIIKREYAALGMKSNFSLFDDQDQLALLKELTE 122

Query: 319 HWMTPTNFKRWQKHLAKWPIAYLAGDDELGSHVENPKLIAWLEKQLDQLAQMGLSKKELQ 378
            W                    L  D +L   + +  L  W    +D      L++ E +
Sbjct: 123 LW--------------------LQNDKDLLQQLVS-ALSNWKNDLIDPAQAAALARSE-R 160

Query: 379 ERLVDHDDYPRLNSELSLCWPCYQAWQQMLKDQNQIDFNIMITRATEYVEKG-KFRSPW- 436
           +RL  H               CY+ + + L+  N +DF+ +I   T  +++  + R  W 
Sbjct: 161 DRLFAH---------------CYRLYDEHLRACNVLDFDDLILLPTLLLKRNEEVRERWQ 205

Query: 437 ---KFIMVDEYQDISPQRLRLLQALCEQNQGQCNLFAVGDDWQSIYQFAGSDVDLTTGFA 493
              ++++VDEYQD +  +  L++ L      +     VGDD QSIY + G+     +   
Sbjct: 206 NRLRYLLVDEYQDTNTSQYELVKLLV---GSRARFTVVGDDDQSIYSWRGARPQNLSLLQ 262

Query: 494 SRFAHSTVHHLDTTYRFNDQIGAVANRFIQQNPHQLPKTLNSFKTQKQKAVMLAPN---H 550
             F    V  L+  YR + +I   AN  I  NPH   K L S     ++  ++  N   H
Sbjct: 263 QDFPQLQVIKLEQNYRSSGRILKAANILIANNPHVFEKRLYSELGYGEELKIITANNEDH 322

Query: 551 SVEKILDEI 559
             E+++ E+
Sbjct: 323 EAERVVGEL 331



 Score = 44.3 bits (103), Expect = 2e-08
 Identities = 26/71 (36%), Positives = 39/71 (54%), Gaps = 11/71 (15%)

Query: 594 KLDFMTCHASKGKEADYVIILAVDEGQFPARVKALHLDDALNQSEDDFPYAEERRLFYVA 653
           ++  MT HASKG E  YV ++ ++EG  P +            S D+    EERRL YV 
Sbjct: 551 QVQLMTLHASKGLEFPYVYLVGMEEGLLPHQT-----------SIDEDNVDEERRLAYVG 599

Query: 654 LTRAKEKVWVT 664
           +TRA++++  T
Sbjct: 600 ITRAQKELTFT 610