Pairwise Alignments

Query, 687 a.a., DNA helicase IV from Vibrio cholerae E7946 ATCC 55056

Subject, 824 a.a., DNA helicase II from Agrobacterium fabrum C58

 Score =  119 bits (297), Expect = 8e-31
 Identities = 111/415 (26%), Positives = 189/415 (45%), Gaps = 54/415 (13%)

Query: 198 SPLNVSQQYAVLLNDDHNLVLAGAGSGKTSVLTARVSYLLQSHLAKPEQILLVAFARDAA 257
           S LN  Q+ AV   D   LVLAGAG+GKT VLT R++++L +  A P QIL V F   AA
Sbjct: 54  SGLNPEQREAVETLDGPVLVLAGAGTGKTRVLTTRIAHILATGRAYPSQILAVTFTNKAA 113

Query: 258 QEMAERLKNKIGLEAERLH-INTFHQLGLRIINRVEGKTVIMSPLANDSKLKQAWCIDWL 316
           +EM ER+   +G   E +  + TFH +G++++ R       +  L +D  +     +  L
Sbjct: 114 REMKERIGVLVGGAVEGMPWLGTFHSIGVKLLRR----HAELIGLKSDFTILDTDDVVRL 169

Query: 317 KRHWMTPTNFKRWQKHLAKWPIAYLAGDDELGSHVENPKLIAWLEKQLDQLAQMGLSKKE 376
            +  +             +WP    AG                    +D     GL+  +
Sbjct: 170 IKQLIQAEGLDD-----KRWPAKQFAG-------------------MIDGWKNKGLTPPD 205

Query: 377 LQERLVDHDDYPRLNSELSLCWPCYQAWQQMLKDQNQIDFNIMITRATEYVEKG-----K 431
           + E     D     N +       Y A+Q  LK  N  DF  ++        +      +
Sbjct: 206 IPEG----DSRAFANGKGR---ELYAAYQARLKTLNACDFGDLLLHPISIFRRHTDILKE 258

Query: 432 FRSPWKFIMVDEYQDISPQRLRLLQALCEQNQGQC-NLFAVGDDWQSIYQFAGSDVDLTT 490
           +   +++I+VDEYQD +  +   L+ L ++ + +  N+  VGDD QSIY + G++VD   
Sbjct: 259 YHQKFRYILVDEYQDTNTAQYMWLRLLAQRAKDEPQNVCCVGDDDQSIYGWRGAEVDNIL 318

Query: 491 GFASRFAHSTVHHLDTTYRFNDQIGAVANRFIQQNPHQLPKTLNSFKT--QKQKAVMLAP 548
            F   F  + V  L+  YR  + I   A   I  N  +L KTL + ++    +K V+ A 
Sbjct: 319 RFDKDFPGAKVIKLERNYRSTEHILGAAGHLIAHNEGRLGKTLFTERSSPDDEKVVVHAA 378

Query: 549 NHSVEKI------LDEINRSTNKLKTVLLLGRNHYHKPELLKDWQNRYLSLKLDF 597
             S E+       ++++ R   KL  + +L R  +     ++++++R+++L L++
Sbjct: 379 WDSEEEARAVGEEIEQLQRKNYKLNDMAILVRASFQ----MREFEDRFVTLGLNY 429



 Score = 39.3 bits (90), Expect = 8e-07
 Identities = 27/74 (36%), Positives = 38/74 (51%), Gaps = 10/74 (13%)

Query: 595 LDFMTCHASKGKEADYVIILAVDEGQFPARVKALHLDDALNQSEDDFPYAEERRLFYVAL 654
           +  MT H++KG E D V +   +EG FP +     LD+      +     EERRL YV +
Sbjct: 599 VSIMTLHSAKGLEFDTVFLPGWEEGLFPHQ---RALDEGGRSGLE-----EERRLAYVGI 650

Query: 655 TRAKE--KVWVTYN 666
           TRAK+   +W   N
Sbjct: 651 TRAKKLCHIWFVSN 664