Pairwise Alignments

Query, 984 a.a., TMAO reductase system sensor histidine kinase/response regulator TorS from Vibrio cholerae E7946 ATCC 55056

Subject, 1258 a.a., PAS domain S-box protein from Magnetospirillum magneticum AMB-1

 Score =  234 bits (596), Expect = 4e-65
 Identities = 152/414 (36%), Positives = 225/414 (54%), Gaps = 14/414 (3%)

Query: 444 EMNHKLNQEVLNHAKARQQAEQASRAKSAFLATMSHEIRTPMNGVLGTARLLQDTTLTST 503
           ++  +   + L H +A  +AE AS+AK+ FLA MSHEIRTPMN ++G + L   T L   
Sbjct: 588 DITERKRADALLH-QALDRAEAASQAKADFLANMSHEIRTPMNAIIGMSHLALKTELNPR 646

Query: 504 QQHYVQVINRSGRSLLAILNDVLDYSKIEAGHLEIHHTHFDLYRLVSETHELMQSRAREK 563
           Q+ YV+ I +SG+ LL I+ND+LD+SKIEAG L +  T   L  ++     L+  +   K
Sbjct: 647 QRDYVRKIQQSGQHLLGIINDILDFSKIEAGKLSVEKTAVHLDTVLDNVANLISEKTIAK 706

Query: 564 GITLTYHIDEDVTQYWQGDEIRIGQVLNNLVGNGIKFTDQGEVRIRIRLAPD-GQGI--R 620
           G+ L + +  DV     GD +R+GQ+L N   N +KFT+ GE+ + +RLA D G+ +  R
Sbjct: 707 GLELIFDVASDVPNDMVGDPLRLGQILINYANNAVKFTETGEIVVAVRLAEDLGEAVRLR 766

Query: 621 FAVEDSGIGIAEEEQATLFDAFTQADAG-RRKLGGTGLGLAISRKLVQAMGGELQLASQL 679
           F V D+GIG++ E+   LF +F QAD    RK GGTGLGLAISRKL + M GE+ + SQ 
Sbjct: 767 FEVRDTGIGLSAEQMGRLFQSFQQADTSTTRKYGGTGLGLAISRKLAELMDGEVGVESQP 826

Query: 680 GQGSCFWFTLPLPVGEPVETPALAVDDVPVANVLLVEDNEVNCLVAQGFLTSLGHQVTLA 739
           G+GS FWFT  L  G P     +   D+   ++L+V+DNE    V    LTS+  +V   
Sbjct: 827 GRGSTFWFTACLGKGRP-RRALVPKPDLRGRHMLVVDDNENARAVLVDMLTSMSFRVEAV 885

Query: 740 KS----VQEAKLCFQQQRFDIALLDIHLPDGNGVDLLRDLRQMEDSIHNAVIPFIAVSAH 795
           +S    V   +     + F++  LD  +P  +G++  R +  +      +    I V+AH
Sbjct: 886 ESGAAAVARVREVAGAKPFEVVFLDWQMPGMDGIETARAILGLG---LTSPPHMIMVTAH 942

Query: 796 VFNEEVAGYLAAGFDGYLPKPLVKE-QLAAMLRQQLTAKSGDDADMRDKAESHD 848
              E +    +AG +  L KP+       A++R    A  GD  +     E  D
Sbjct: 943 GREEVMKAAESAGIEDVLIKPVNPSIMFDAVMRALGAALEGDPEEAAAGREVSD 996



 Score = 60.8 bits (146), Expect = 5e-13
 Identities = 76/300 (25%), Positives = 127/300 (42%), Gaps = 43/300 (14%)

Query: 694  GEPVETPA-LAVDDVPVAN-----VLLVEDNEVNCLVAQGFLTSLGHQVTLAKSVQEAKL 747
            G+P E  A   V D  +A+     VLL EDN+ N  VA   L   G +V +A++ + A  
Sbjct: 983  GDPEEAAAGREVSDDALASLRGLRVLLAEDNDFNQQVATELLADGGVEVEVAENGKIAVD 1042

Query: 748  CFQQQRFDIALLDIHLPDGNGVDLLRDLRQMEDSIHNAVIPFIAVSAHVFNEEVAGYLAA 807
                  +D+ L+D+ +P  +GV   R++R+    +    +P IA++A+    +     AA
Sbjct: 1043 MVMAAPYDMVLMDMQMPVMDGVAATREIRR----LGFGDLPVIAMTANAMQADRDRCAAA 1098

Query: 808  GFDGYLPKPLVKEQLAAMLRQQLTAKSGDDADMRDKAESHDTSSIFDNGQPQGEPSPEAQ 867
            G + YL KP+  ++L A L +                        +    P    +P A 
Sbjct: 1099 GMNDYLTKPIDPDELFACLLK------------------------WRGVAPTAVVAPAAP 1134

Query: 868  AVRKEWVAVMDHAKFEQD----VQILGVEKMREIVGYFEQGCAEFFALCEAERDNDAQIK 923
            A     +  +D   F+ +    +    + ++R I+  F        A  EAE D  A ++
Sbjct: 1135 AGAVPLLPEIDPDVFDFERMGPIYKWDMARLRPILAAFLDDAGTKVARLEAETDL-AALR 1193

Query: 924  SQAHKLKGSAGALWLTQLYQLCQQIEKA---DSPAAAYQQTPLV-DAVENAKQALRNALD 979
              AH LKG+A      +L +L   +E +    + AAA    PL+   +   + AL   LD
Sbjct: 1194 EVAHGLKGTANTAGALRLGRLAADVENSARDGNDAAAGMLIPLLPPTLSELRDALAPVLD 1253