Pairwise Alignments

Query, 439 a.a., sigma-54-dependent Fis family transcriptional regulator from Vibrio cholerae E7946 ATCC 55056

Subject, 455 a.a., DNA-binding transcriptional regulator NtrC from Xanthobacter sp. DMC5

 Score =  172 bits (436), Expect = 2e-47
 Identities = 134/461 (29%), Positives = 226/461 (49%), Gaps = 57/461 (12%)

Query: 20  MKSTVLLIDDDQDVLDSYLHLMSIAGLTAKAVIDPTQAMSHIQPDWNGVVLLDMYMP--Q 77
           M   +L++DD+ D+ +    ++   G +A+   D   A+  I      +V LD+++   +
Sbjct: 1   MAMDILIVDDEADIGELVAGILEDEGYSARTARDADGALGAIATRRPNLVFLDIWLQGSR 60

Query: 78  LHGMELLKQIKAVDDKIPVIVITGHGDIPMAVEAVKMGACDFLEKPINPPQLLTLIKQHL 137
           L G+ELL +IK+    +PV++I+GHG+I  AV A+K GA DF+EKP N  +L+ + ++ L
Sbjct: 61  LDGLELLNEIKSQHPDLPVVMISGHGNIETAVAAIKRGAYDFIEKPFNADRLVMVTERAL 120

Query: 138 E---LRRSFIEQKLLLSRSVKRELVGKSAQMEQIRSHVAQYALLNRHVVIVGESGCGRHT 194
           E   L+R   E K L      R L+G+S+ ++Q++  + +    N  ++IVG SG G+  
Sbjct: 121 ETLRLKRELKELKQLTPHG--RILIGRSSAIQQLKGTIERVGPTNSRILIVGPSGSGKEL 178

Query: 195 IAYLIHQLTTNNGHLPWVELVASAKT------------EWSTVEPK---VQESAGGTLLI 239
            A LIH + +     P+V L ++A T            E    E K   ++E+ GGTL +
Sbjct: 179 TARLIHSV-SGRAQGPFVVLNSAAMTPERLEFELFGVAEGEGREQKRGALEEAHGGTLFL 237

Query: 240 DHIELLSEEVQRNVVQSLLNQERLN-------RPRTRVIAVIDQPPEQLIAQNQLLPELY 292
           D I  +  E Q  V++ L+ Q               R+I+   +  E+ IA+ +   +LY
Sbjct: 238 DEIADMPRETQNRVLRVLVEQTFTRVGSNDKVTVDVRIISSTGRNLEEEIAKGRFREDLY 297

Query: 293 YLLNQGQIDVPLLRQRPDDIAALFHYFLKQSCYKLGKPMPNVEPHYLALLRAHQWPGNVR 352
           + L+   I VP L +R +DI  L  +FL       G P   +    +A+L++H WPGNVR
Sbjct: 298 HRLSVVPIRVPPLAERREDIPDLVDFFLDSISQTTGLPRRPIGEDAMAVLQSHDWPGNVR 357

Query: 353 ELRNVAELYAIGIVKLAGKE-------------------RLYN----QEEMLSPLDELVD 389
           +LRN  E   I    LAG +                    L N    +  M  PL E  +
Sbjct: 358 QLRNNVERLLI----LAGGDPEATITAAMLPPDVGALVPTLPNGNGGEHLMGLPLREARE 413

Query: 390 DYEKQVIEDALFLFSGRVADAANYLQVPRKKLYLRMKKHGL 430
            +E++ +   +  F G ++  A ++ + R  L+ ++K  G+
Sbjct: 414 VFEREYLAAQINRFGGNISRTAEFVGMERSALHRKLKALGV 454