Pairwise Alignments

Query, 439 a.a., sigma-54-dependent Fis family transcriptional regulator from Vibrio cholerae E7946 ATCC 55056

Subject, 464 a.a., Regulatory protein AtoC from Xanthobacter sp. DMC5

 Score =  142 bits (359), Expect = 2e-38
 Identities = 126/464 (27%), Positives = 214/464 (46%), Gaps = 47/464 (10%)

Query: 19  KMKSTVLLIDDDQ---DVLDSYLHLMSIAGLTAKAVIDPTQAMSHIQPDWNGVVLLDMYM 75
           +M + +L++DD+    +VL++ L       ++   V    +A+++       +VL D+ M
Sbjct: 3   RMAAKILIVDDEVRHGEVLEAALAERGFEAVSTNTV---AKALAYCASQPVDLVLSDLRM 59

Query: 76  PQLHGMELLKQIKAVDDKIPVIVITGHGDIPMAVEAVKMGACDFLEKPINPPQLLTLIKQ 135
           P   G +LL+ +K    ++PVI++T +  +  AV+ VK GA D++ KP++   ++  I +
Sbjct: 60  PDRGGADLLRALKHEQPELPVIIMTAYASVRGAVDLVKDGAFDYVAKPLDLDDVVATIAR 119

Query: 136 HLELRRSFIEQKLLLSRSVKR----ELVGKSAQMEQIRSHVAQYALLNRHVVIVGESGCG 191
            L L+    E   L S   +R     L+G+SA    +   V + A     V+++GESG G
Sbjct: 120 ALRLKAVESENSRLRSELEERYRFDNLLGESAVFHHVLRQVTEVAPSRASVLLLGESGTG 179

Query: 192 RHTIAYLIHQLTTNNGHLPWVELVASAKTEW------------------STVEPKVQESA 233
           +  +A  IH  +     LP+V +  +A  E                      E +   + 
Sbjct: 180 KELVARAIHYNSPRRD-LPFVAVNCAAIPETLIESELFGHVKGAFTGATGVREGRFAAAN 238

Query: 234 GGTLLIDHIELLSEEVQRNVVQSLLNQ--ERLNRPRT-----RVIAVIDQPPEQLIAQNQ 286
            GTL +D I  +   VQ  V+++L  Q  E +   ++     R+IA   +  ++ IA   
Sbjct: 239 QGTLFLDEIADMPLPVQAKVLRALQEQSFEPVGSSKSVSVDVRIIAATHKDLQKEIAAGT 298

Query: 287 LLPELYYLLNQGQIDVPLLRQRPDDIAALFHYFLKQSCYKLGKPMPNVEPHYLALLRAHQ 346
              +LYY L    I +P LR+R DDI  L  +FL  +   +GK +  + P   A+L  ++
Sbjct: 299 FRMDLYYRLAVFPITLPPLRERTDDIVLLADHFLAAATRDMGKRVKGLTPEAQAMLTRYR 358

Query: 347 WPGNVRELRNVAELYAI---------GIVKL--AGKERLYNQEEMLSPLDELVDDYEKQV 395
           WPGNVREL+N  E  AI         G + L  A  +       +   LD  +   E++ 
Sbjct: 359 WPGNVRELQNCMERAAIVARGDLVGPGDLLLFEANGDTDVQSHTLNGDLDSELSRIEREF 418

Query: 396 IEDALFLFSGRVADAANYLQVPRKKLYLRMKKHGLEKDAFKARG 439
           +  AL    G  A AA  L +  + L+ R+KK  ++ D     G
Sbjct: 419 VLQALKDSGGVQARAAEKLGITERSLWHRIKKLAIKIDKVAGAG 462