Pairwise Alignments

Query, 439 a.a., sigma-54-dependent Fis family transcriptional regulator from Vibrio cholerae E7946 ATCC 55056

Subject, 455 a.a., C4-dicarboxylate transport transcriptional regulatory protein DctD from Xanthobacter sp. DMC5

 Score =  213 bits (542), Expect = 1e-59
 Identities = 143/443 (32%), Positives = 226/443 (51%), Gaps = 30/443 (6%)

Query: 24  VLLIDDDQDVLDSYLHLMSIAGLTAKAVIDPTQAMSHIQPDWNGVVLLDMYMPQLHGMEL 83
           V  IDDD  +  + +  + +AGLT        +A+  I  D+ GVV+ D+ MP++ G+EL
Sbjct: 8   VAFIDDDAVLRAANVQALMLAGLTVAGYGSAMEALEVIDADFPGVVVTDVRMPRIDGLEL 67

Query: 84  LKQIKAVDDKIPVIVITGHGDIPMAVEAVKMGACDFLEKPINPPQLLTLIKQHLELRRSF 143
            +++KA D  +PVI++TGHGDI MAV+A++ GA DFL KP    +L+  I+  L+ RR  
Sbjct: 68  FRRLKARDADLPVILVTGHGDIAMAVDAMREGAYDFLAKPYASERLVASIRHALDRRRLV 127

Query: 144 IEQKLLLSRSVKR-----ELVGKSAQMEQIRSHVAQYALLNRHVVIVGESGCGRHTIAYL 198
           +E +  L R+V        L+G SA M ++R  + Q A  +  V++ GE+G G+  +A  
Sbjct: 128 LENR-ELKRAVATTQDDLPLLGTSAVMARLRQMLRQIADADVDVLVEGETGSGKEVVATA 186

Query: 199 IHQ---------LTTNNGHLPWV----ELVASAKTEWSTVEPK----VQESAGGTLLIDH 241
           +H+         +  N G LP      EL       ++    K    ++ + GGTL +D 
Sbjct: 187 LHRWSRRAARPLVAVNCGALPETVIESELFGYEAGAFTGAVKKRVGRIEHAHGGTLFLDE 246

Query: 242 IELLSEEVQRNVVQSL-------LNQERLNRPRTRVIAVIDQPPEQLIAQNQLLPELYYL 294
           IE +S  +Q  +++ L       L      R   RV+A        L+ Q     +LYY 
Sbjct: 247 IEAMSPALQVKLLRVLEAREIAPLGTNETRRVDIRVVAASKVDLPALVKQGSFREDLYYR 306

Query: 295 LNQGQIDVPLLRQRPDDIAALFHYFLKQSCYKLGKPMPNVEPHYLALLRAHQWPGNVREL 354
           L+   + +P LR+R  D+  LF +FL ++  +  +P P ++   L  L  H WPGNVREL
Sbjct: 307 LHVAAVRIPALRERRGDVPLLFGHFLARAAERFNRPPPELDAGVLRHLAEHDWPGNVREL 366

Query: 355 RNVAELYAIGIVKLAGKERLYNQEEMLSPLDELVDDYEKQVIEDALFLFSGRVADAANYL 414
            + AE  A+G+V+                L E VD +E Q I  AL    G V      L
Sbjct: 367 VHYAERVALGLVEPEQPSAPAEAGGGKGTLPERVDAFEAQEIRAALEANKGDVQATVAAL 426

Query: 415 QVPRKKLYLRMKKHGLEKDAFKA 437
            +PRK  Y ++++HG+++ A++A
Sbjct: 427 GIPRKTFYDKLRRHGIDQAAYRA 449