Pairwise Alignments

Query, 439 a.a., sigma-54-dependent Fis family transcriptional regulator from Vibrio cholerae E7946 ATCC 55056

Subject, 441 a.a., C4-dicarboxylate ABC transporter from Pseudomonas simiae WCS417

 Score =  193 bits (491), Expect = 8e-54
 Identities = 135/446 (30%), Positives = 227/446 (50%), Gaps = 36/446 (8%)

Query: 20  MKSTVLLIDDDQDVLDSYLHLMSIAGLTAKAVIDPTQAMSHIQPDWNGVVLLDMYMPQLH 79
           M + V+++DD+  +  +    +S++G   +      + ++ +  D+ GV+L D+ MP L 
Sbjct: 1   MLNAVIVVDDEASIRTAVEQWLSLSGFEVQLFSRAEECLAQLPKDFPGVILSDVRMPGLS 60

Query: 80  GMELLKQIKAVDDKIPVIVITGHGDIPMAVEAVKMGACDFLEKPINPPQLLTLIKQHLEL 139
           G+ELL +++  D  +PVI++TGHGD+PMAVEA++ GA DFLEKP +P  LL  +++ L+ 
Sbjct: 61  GLELLAEVQRRDADLPVILLTGHGDVPMAVEAMRDGAYDFLEKPFSPDALLNSLRRALDK 120

Query: 140 RRSFIEQKLLLSRS-----VKRELVGKSAQMEQIRSHVAQYALLNRHVVIVGESGCGRHT 194
           R   +E + L  ++     ++  L+G S  ++ +R  V   A L  +V+I GE+G G+  
Sbjct: 121 RGLILENRRLHQQADHRAQLESTLLGVSRGLQTLRRQVLDLASLPVNVLIRGETGSGKEL 180

Query: 195 IAYLIHQLTTNNGHLPWVELVASAKTEWSTVEP------------------KVQESAGGT 236
           +A  +H         P+V L  +A  E                        K++ + GGT
Sbjct: 181 VARCLHDFGP-RAKKPFVALNCAAIPEQLFEAELFGHESGAFTGAQGKRIGKLEYAHGGT 239

Query: 237 LLIDHIELLSEEVQRNVVQSLLNQ--ERLNRPRT-----RVIAVIDQPPEQLIAQNQLLP 289
           L +D IE +    Q  +++ L  Q  ERL   ++     R+IA       +     +   
Sbjct: 240 LFLDEIESMPLAQQVKLLRVLQEQKLERLGSNQSIHVDLRIIAATKPDLLEEARAGRFRE 299

Query: 290 ELYYLLNQGQIDVPLLRQRPDDIAALFHYFLKQSCYKLGKPMPNVEPHYLALLRAHQWPG 349
           +L Y LN  Q+ +P LR+R +DI  LF +F + +  +LG+ +  +    L  L +H WPG
Sbjct: 300 DLAYRLNVAQLRLPPLRERREDIPLLFDHFAQSAAERLGRSVEPLSGAQLGRLLSHDWPG 359

Query: 350 NVRELRNVAELYAIGIVKLAGKERLYNQEEMLSPLDELVDDYEKQVIEDALFLFSGRVAD 409
           NVREL NVAE   +G+    G+      E   S L    + +E   ++ AL    G +  
Sbjct: 360 NVRELANVAERQVLGL----GEPEPEGVEAGQS-LAAQQEAFEAHCLKAALTRHKGDIKA 414

Query: 410 AANYLQVPRKKLYLRMKKHGLEKDAF 435
               LQ+PR+ L  +M++HGL ++ F
Sbjct: 415 VLAELQLPRRTLNEKMQRHGLVREMF 440