Pairwise Alignments

Query, 439 a.a., sigma-54-dependent Fis family transcriptional regulator from Vibrio cholerae E7946 ATCC 55056

Subject, 458 a.a., Fis family transcriptional regulator from Pseudomonas simiae WCS417

 Score =  226 bits (577), Expect = 9e-64
 Identities = 151/443 (34%), Positives = 234/443 (52%), Gaps = 39/443 (8%)

Query: 24  VLLIDDDQDVLDSYLHLMSIAGLTAKAVIDPTQAMSHIQPDWNGVVLLDMYMPQLHGMEL 83
           V+LIDDD  +  +    + +AGL    + + T   + +  DW GVV+ D+ MP + G+EL
Sbjct: 9   VVLIDDDPHLRQALCQTLDLAGLNVLTLGEATGLTARLSRDWPGVVVSDIRMPGMDGLEL 68

Query: 84  LKQIKAVDDKIPVIVITGHGDIPMAVEAVKMGACDFLEKPINPPQLLTLIKQHLELRRSF 143
           L ++   D ++PV++ITGHGD+P+AV+A++ GA DFLEKP     LL  +++ L LRR  
Sbjct: 69  LAELHGQDPELPVLLITGHGDVPLAVQAMRAGAYDFLEKPFASDALLDSVRRALALRRLV 128

Query: 144 IEQ---KLLLS--RSVKRELVGKSAQMEQIRSHVAQYALLNRHVVIVGESGCGRHTIAYL 198
           ++    +L LS  + +   LVG S QM ++R  +   A     V+I+GE+G G+  +A  
Sbjct: 129 LDNRSLRLALSDRQQLSTRLVGHSPQMLRLREQIGALAATRADVLILGETGAGKEVVARA 188

Query: 199 IHQLTTNNGHLPWVELVASAKTEWSTVEP-------------------KVQESAGGTLLI 239
           +H L++     P+V + A A  E S VE                    K + + GGTL +
Sbjct: 189 LHDLSSRRSG-PFVAINAGALAE-SVVESELFGHEPGAFTGAQKRRIGKFEFANGGTLFL 246

Query: 240 DHIELLSEEVQRNVVQSLLNQ--ERLNRPR-----TRVIAVIDQPPEQLIAQNQLLPELY 292
           D IE +S +VQ  +++ L  +  ERL   +      R+IA   +   Q   Q +   +LY
Sbjct: 247 DEIESMSLDVQVKLLRLLQERVVERLGGNQLIPLDIRIIAATKEDLRQSADQGRFRADLY 306

Query: 293 YLLNQGQIDVPLLRQRPDDIAALFHYFLKQSCYKLGKPMPNVEPHYLALLRAHQWPGNVR 352
           Y LN   + +P LR+R +D   LF +F  ++  + G P+  ++P   ALL  H WPGNVR
Sbjct: 307 YRLNVAPLRIPPLRERGEDALMLFQHFADEASSRHGLPLHELQPGQRALLLRHSWPGNVR 366

Query: 353 ELRNVAELYAIGIVKLAGKERLYNQE-----EMLSPLDELVDDYEKQVIEDALFLFSGRV 407
           EL+N AE +A+G+ +LA      N            L E V+ +EK +I   L      +
Sbjct: 367 ELQNAAERFALGL-ELALDNTPDNPSAGTLTSTPGGLSEQVEQFEKSLIAAELTRPHSSM 425

Query: 408 ADAANYLQVPRKKLYLRMKKHGL 430
              A  L VPRK L+ +++KHGL
Sbjct: 426 RSLAEALGVPRKTLHDKLRKHGL 448