Pairwise Alignments

Query, 439 a.a., sigma-54-dependent Fis family transcriptional regulator from Vibrio cholerae E7946 ATCC 55056

Subject, 449 a.a., Fis family transcriptional regulator from Pseudomonas simiae WCS417

 Score =  216 bits (551), Expect = 9e-61
 Identities = 139/443 (31%), Positives = 242/443 (54%), Gaps = 35/443 (7%)

Query: 19  KMKSTVLLIDDDQDVLDSYLHLMSIAGLTAKAVIDPTQAMSHIQPDWNGVVLLDMYMPQL 78
           K + TVL+++DD  VL      +++  + +  V    +A+  I  ++ G+V+ D+ +P +
Sbjct: 9   KDELTVLIVEDDPHVLLGCQQALALEDIPSVGVGSAEEALKRIGENFAGIVISDIRLPGI 68

Query: 79  HGMELLKQIKAVDDKIPVIVITGHGDIPMAVEAVKMGACDFLEKPINPPQLLTLIKQHLE 138
            G+ELL ++KA+D  +PV++ITGHGDI MAV A++ GA DF+EKP +P +L+ + ++ LE
Sbjct: 69  DGLELLTRLKALDKSLPVVLITGHGDISMAVGAMRNGAYDFMEKPFSPERLVDVARRALE 128

Query: 139 LRRSFIE-----QKLLLSRSVKRELVGKSAQMEQIRSHVAQYALLNRHVVIVGESGCGRH 193
            R    E     ++L    S++  ++G+S  M+ +R  +A  A  + +V+I GE+G G+ 
Sbjct: 129 QRGLAREVWSLRRQLAERDSLEGRIIGRSPAMQNLRELIANVADTSANVLIEGETGTGKE 188

Query: 194 TIAYLIHQLTTNNGHLPWVELVASAKTEWSTVEP-------------------KVQESAG 234
            +A  +H  +  + H  +V L      E +  E                    K++ +  
Sbjct: 189 LVARCLHDFSRRHAH-QFVALNCGGLPE-NLFESEIFGHEANAFTGAGKRRIGKIEHAHE 246

Query: 235 GTLLIDHIELLSEEVQRNVVQSLLNQ--ERLNRPRT-----RVIAVIDQPPEQLIAQNQL 287
           GTL +D +E +   +Q  +++ L  +  ERL   ++     RVIA      ++L   NQ 
Sbjct: 247 GTLFLDEVESMPINLQIKLLRVLQERTLERLGSNQSVAVDCRVIAATKSDLDELSRANQF 306

Query: 288 LPELYYLLNQGQIDVPLLRQRPDDIAALFHYFLKQSCYKLGKPMPNVEPHYLALLRAHQW 347
             +LYY LN   +++P LR+R +DI  LF +FL+QS  +  + +P ++   L+ L +H W
Sbjct: 307 RSDLYYRLNVVTLELPPLRERREDILQLFEHFLQQSSLRFDRSVPELDNQTLSSLMSHDW 366

Query: 348 PGNVRELRNVAELYAIGIVKLAGKERLYNQEEMLSPLDELVDDYEKQVIEDALFLFSGRV 407
           PGNVRELRNVAE +A+G+   A K+   +         E V+ +E+ ++ DAL    G +
Sbjct: 367 PGNVRELRNVAERFALGLP--AFKKSGTSSGSQGLAFTEAVEAFERNLLNDALQRSGGNL 424

Query: 408 ADAANYLQVPRKKLYLRMKKHGL 430
             A+  L + +  L+ ++KK+GL
Sbjct: 425 TQASQELGMAKTTLFDKVKKYGL 447