Pairwise Alignments

Query, 439 a.a., sigma-54-dependent Fis family transcriptional regulator from Vibrio cholerae E7946 ATCC 55056

Subject, 450 a.a., sigma-54-dependent Fis family transcriptional regulator from Vibrio cholerae E7946 ATCC 55056

 Score =  188 bits (478), Expect = 3e-52
 Identities = 138/448 (30%), Positives = 232/448 (51%), Gaps = 38/448 (8%)

Query: 24  VLLIDDDQDVLDSYLHLMSIAGLTAKAVIDPTQAMSHIQPDWNGVVLLDMYMPQLHGMEL 83
           + LI+DD  V  +    + +AG       D   A++ I+      V+ D+ +P   G+ L
Sbjct: 6   IALIEDDDIVRQATGQWLQLAGFDVAMFADGASALAAIEQQSFAAVVSDVRLPDTDGLSL 65

Query: 84  LKQIKAVDDKIPVIVITGHGDIPMAVEAVKMGACDFLEKPINPPQLLTLIKQHLELRRSF 143
           L  +K V   +PVI+ITGHGD+ MAV+A+  GA DF+EKP  P +L   + Q +   ++ 
Sbjct: 66  LVALKNVQSLMPVILITGHGDVDMAVKALHQGAFDFIEKPFQPERLANTVAQAVSQYQNA 125

Query: 144 IEQK-----LLLSRSVKRELVGKSAQMEQIRSHVAQYALLNRHVVIVGESGCGRHTIAYL 198
           +  +     L  ++ +++ L+G+   ++ +R  +A+ A ++ +V+I GE+GCG+  +A  
Sbjct: 126 LSSQSRAHYLASAKGLEQILIGQCKSIQLLREQIAKVAAMDTNVIIYGETGCGKELVAQC 185

Query: 199 IHQ---------LTTNNGHLP----WVELVASAKTEWSTVEP----KVQESAGGTLLIDH 241
           +HQ         +  N G +P      EL       ++        K++ +  GTL +D 
Sbjct: 186 LHQASERQRGQFVAINCGAIPENLFESELFGHEAGAFTGAVKRRIGKLELADKGTLFLDE 245

Query: 242 IELLSEEVQRNVVQSLLNQ--ERL--NRPRTRVIAVIDQPPEQLIAQNQLLPELYYLLNQ 297
           IE +   +Q  V++ L +   ER+  N+P T  + VI    E+L    +   +L+Y LN 
Sbjct: 246 IESMPLAMQVKVLRVLQDHVVERVGSNQPITIDLRVIAAAKEELRQHAEFRQDLFYRLNV 305

Query: 298 GQIDVPLLRQRPDDIAALFHYFLKQSCYKLGKPMPNV-EPHYLALLRAHQWPGNVRELRN 356
            Q+ +P LR+R DDI  LF +F    C ++     ++ E   LALL  ++WPGNVRELRN
Sbjct: 306 AQLYLPPLRERGDDILLLFEHF----CVQVKPTWRSLSEADRLALL-TYRWPGNVRELRN 360

Query: 357 VAELYA----IGIVKLAGKERLYNQEEMLS--PLDELVDDYEKQVIEDALFLFSGRVADA 410
           VA  YA    I + ++        +EE  +  PL   V ++E++VI  AL    G +++ 
Sbjct: 361 VALRYALDDSISVGEILASCPGMTEEEASAGLPLAIQVHNFERKVIAQALHRHQGNISEV 420

Query: 411 ANYLQVPRKKLYLRMKKHGLEKDAFKAR 438
              L +PR+ L  +M+K GL +  F A+
Sbjct: 421 MKELDLPRRTLNQKMQKFGLLRGDFTAQ 448