Pairwise Alignments

Query, 439 a.a., sigma-54-dependent Fis family transcriptional regulator from Vibrio cholerae E7946 ATCC 55056

Subject, 438 a.a., hypothetical protein from Sphingobium sp. HT1-2

 Score =  205 bits (521), Expect = 3e-57
 Identities = 138/442 (31%), Positives = 227/442 (51%), Gaps = 41/442 (9%)

Query: 24  VLLIDDDQDVLDSYLHLMSIAGLTAKAVIDPTQAMSHIQPDWNGVVLLDMYMPQLHGMEL 83
           + L+DDD D+  +    +++AG   +A      A++ I  D+ GVV+ D+ MP + G++L
Sbjct: 9   IALVDDDDDLRAAMAQTLTLAGHEVRAFARAADALAAIDADFPGVVVSDVRMPHMSGIDL 68

Query: 84  LKQIKAVDDKIPVIVITGHGDIPMAVEAVKMGACDFLEKPINPPQLLTLIKQHLELRRSF 143
            + + A D ++PVI++TGHGD+PMAV+A+K GA DFL KP NP  LL  + +  E R   
Sbjct: 69  FRALHARDAELPVILVTGHGDVPMAVDALKAGAWDFLTKPFNPDALLASVARASEKRLLV 128

Query: 144 IEQKLL---LSRSVKRELVGKSAQMEQIRSHVAQYALLNRHVVIVGESGCGRHTIAYLIH 200
           IE + L   +  +V   L+G S  +E++R  VA  A  N  +++ GE+G G+  +A +IH
Sbjct: 129 IENRRLRAMVDTAVASPLIGHSPAIERLRDMVATLADTNIDILVEGETGTGKELVARMIH 188

Query: 201 QLTTNNGHLPWVELVASAKTE--------------WSTVEPKVQESAGGTLLIDHIELLS 246
           Q  +      +V +  +A  +               + +E ++  +  GTL +D ++   
Sbjct: 189 Q-RSRRASAQFVSIACAAVPDAIAETSLHGESLAGRAPLEGRLARAHQGTLFLDDVDQSG 247

Query: 247 EEVQRNVVQSLLNQERLNRP---------RTRVIAVIDQPPEQLIAQNQLLPELYYLLNQ 297
             +Q +++Q L  ++RL RP           RVI  + Q  +    Q    P L Y L  
Sbjct: 248 PALQAHLIQFL--EDRLVRPVGAREPQPVDLRVIGCMTQQGQAATIQ----PALLYRLAA 301

Query: 298 GQIDVPLLRQRPDDIAALFHYFLKQSCYKLGKPMPNVEPHYLALLRAHQWPGNVRELRNV 357
            ++ +P LR+R +DI  +F + L  +  +  + +P V    LA L  H WPGNV EL  +
Sbjct: 302 VRLHIPPLRERREDIPLIFAHLLDAAARRFRRTVPPVSRAVLAHLLDHDWPGNVHELGRL 361

Query: 358 AELYAIGIVKLAGKERLYNQEEMLSPLDELVDDYEKQVIEDALFLFSGRVADAANYLQVP 417
           AE  A+G+      E+    +    PLD  +D +E+  I +A+    G +  A   L +P
Sbjct: 362 AERLALGL------EQEPVADGATLPLDARMDAFERMAIIEAIQATGGDMGQAIERLGLP 415

Query: 418 RKKLYLRMKKHGLEKDAFKARG 439
           RK  Y R+++ G+  D  K RG
Sbjct: 416 RKTFYYRVRRLGI--DLRKLRG 435