Pairwise Alignments

Query, 439 a.a., sigma-54-dependent Fis family transcriptional regulator from Vibrio cholerae E7946 ATCC 55056

Subject, 442 a.a., C4-dicarboxylate transport transcriptional regulatory protein from Pseudomonas putida KT2440

 Score =  227 bits (578), Expect = 6e-64
 Identities = 147/445 (33%), Positives = 240/445 (53%), Gaps = 47/445 (10%)

Query: 23  TVLLIDDDQDVLDSYLHLMSIAGLTAKAVIDPTQAMSHIQPDWNGVVLLDMYMPQLHGME 82
           TVL+++DD  VL      +++  +  + V    QA+  I  D+ G+V+ D+ +P + G+E
Sbjct: 7   TVLIVEDDPHVLLGCQQALALEDIACEGVGSAEQALERIGDDFAGIVVSDIRLPGIDGLE 66

Query: 83  LLKQIKAVDDKIPVIVITGHGDIPMAVEAVKMGACDFLEKPINPPQLLTLIKQHLE---- 138
           LL ++KA D  +PV++ITGHGDI MAV A++ GA DF+EKP +P +L+ ++++ LE    
Sbjct: 67  LLNRLKARDRSLPVVLITGHGDIDMAVGAMRNGAYDFMEKPFSPERLVDVVRRALEQRGL 126

Query: 139 ------LRRSFIEQKLLLSRSVKRELVGKSAQMEQIRSHVAQYALLNRHVVIVGESGCGR 192
                 LRR   EQ      S++  ++G+S  ME +R  +A  A  + +V+I GE+G G+
Sbjct: 127 SREVVALRRQLAEQS-----SLEGRIIGRSPAMEHLRELIANVADTSANVLIEGETGTGK 181

Query: 193 HTIAYLIHQLTTNNGHLPWVELVASAKTEWSTVEP-------------------KVQESA 233
             +A  +H  +    H P+V L      E +  E                    K++ + 
Sbjct: 182 ELVARCLHDFSRRQSH-PFVALNCGGLPE-NLFESEIFGHEANAFTGAGKRRIGKIEHAN 239

Query: 234 GGTLLIDHIELLSEEVQRNVVQSLLNQ--ERLNRPRT-----RVIAVIDQPPEQLIAQNQ 286
           GGTL +D +E +   +Q  +++ L  +  ERL   ++     RVIA      + L    Q
Sbjct: 240 GGTLFLDEVESMPINLQIKLLRVLQERTLERLGSNQSIPVDCRVIAATKADLDALGQSGQ 299

Query: 287 LLPELYYLLNQGQIDVPLLRQRPDDIAALFHYFLKQSCYKLGKPMPNVEPHYLALLRAHQ 346
              +LYY LN   +++P LR+R +DI  LF +FL+QS  +  +  P ++   L+ L AH 
Sbjct: 300 FRSDLYYRLNVVTLELPPLRERREDILQLFEHFLQQSALRFDRETPTLDSQTLSRLMAHD 359

Query: 347 WPGNVRELRNVAELYAIGIVKL-AGKERLYNQEEMLSPLDELVDDYEKQVIEDALFLFSG 405
           WPGNVRELRNVAE YA+G+     G     NQ  + +   E V+ +E+ ++ DAL    G
Sbjct: 360 WPGNVRELRNVAERYALGLPAFKKGPSGGANQGLLFA---EAVEAFERNLLTDALQRTGG 416

Query: 406 RVADAANYLQVPRKKLYLRMKKHGL 430
            ++ A+  L + +  L+ ++KK+GL
Sbjct: 417 NLSQASQELGMAKTTLFDKVKKYGL 441