Pairwise Alignments

Query, 439 a.a., sigma-54-dependent Fis family transcriptional regulator from Vibrio cholerae E7946 ATCC 55056

Subject, 449 a.a., C4-dicarboxylate transport transcriptional regulatory protein DctD from Pseudomonas sp. RS175

 Score =  188 bits (478), Expect = 3e-52
 Identities = 133/442 (30%), Positives = 221/442 (50%), Gaps = 36/442 (8%)

Query: 24  VLLIDDDQDVLDSYLHLMSIAGLTAKAVIDPTQAMSHIQPDWNGVVLLDMYMPQLHGMEL 83
           V+++DD+  +  +    +S++G   +      + ++ +   + GV+L D+ MP L G+EL
Sbjct: 10  VMVVDDEASIRSAVEQWLSLSGFQVQLFGRAEECLASLPEHFAGVILSDVRMPGLSGLEL 69

Query: 84  LKQIKAVDDKIPVIVITGHGDIPMAVEAVKMGACDFLEKPINPPQLLTLIKQHLELRRSF 143
           L +++  D  +PVI++TGHGD+PMAVEA++ GA DFLEKP +P  LL  +++ L+ R   
Sbjct: 70  LAEVRRRDPDLPVILLTGHGDVPMAVEAMRDGAYDFLEKPFSPEALLGSLRRALDKRALV 129

Query: 144 IEQKLLLSRSVKR-----ELVGKSAQMEQIRSHVAQYALLNRHVVIVGESGCGRHTIAYL 198
           +E + L  ++  R      L+G S  ++ +R  V   A L  +V+I GE+G G+  +A  
Sbjct: 130 LENRRLHEQADARARLDGTLLGVSRALQNLRRQVLDLATLPVNVLIRGETGSGKELVARC 189

Query: 199 IHQLTTNNGHLPWVELVASAKTE------------------WSTVEPKVQESAGGTLLID 240
           +H         P+V L  +A  E                        K++ + GGTL +D
Sbjct: 190 LHDFGP-RASKPFVALNCAAIPEPLFEAELFGHESGAFTGAQGKRIGKLEYADGGTLFLD 248

Query: 241 HIELLSEEVQRNVVQSLLNQ--ERLNRPRT-----RVIAVIDQPPEQLIAQNQLLPELYY 293
            IE +    Q  +++ L  Q  ERL   ++     R++A       +     +   +L Y
Sbjct: 249 EIESMPLAQQVKLLRVLQEQKLERLGSNQSIAVDLRIVAATKPDLLEEARAGRFREDLAY 308

Query: 294 LLNQGQIDVPLLRQRPDDIAALFHYFLKQSCYKLGKPMPNVEPHYLALLRAHQWPGNVRE 353
            LN  ++ +P LR+R +DI  LF +F   +  +LG+    +    L+ L +H WPGNVRE
Sbjct: 309 RLNIAELRLPPLRERREDIPLLFEHFTHSAAERLGRRAAPLSGPQLSHLLSHDWPGNVRE 368

Query: 354 LRNVAELYAIGIVKLAGKERLYNQEEMLSPLDELVDDYEKQVIEDALFLFSGRVADAANY 413
           L NVAE   +G+     +  L   E   S L    + +E Q +  AL    G V      
Sbjct: 369 LANVAERQLLGL----DQPHLLESEPGQS-LAARQEAFEAQCLRAALARHKGDVKAVLEE 423

Query: 414 LQVPRKKLYLRMKKHGLEKDAF 435
           LQ+PR+    +M++HGL ++ F
Sbjct: 424 LQLPRRTFNEKMQRHGLSREMF 445