Pairwise Alignments

Query, 439 a.a., sigma-54-dependent Fis family transcriptional regulator from Vibrio cholerae E7946 ATCC 55056

Subject, 441 a.a., C4-dicarboxylate transport transcriptional regulatory protein DctD from Pseudomonas sp. DMC3

 Score =  205 bits (522), Expect = 2e-57
 Identities = 131/437 (29%), Positives = 235/437 (53%), Gaps = 32/437 (7%)

Query: 23  TVLLIDDDQDVLDSYLHLMSIAGLTAKAVIDPTQAMSHIQPDWNGVVLLDMYMPQLHGME 82
           +VL+++DD  VL      +++  +    V    +A++ +  ++ G+V+ D+ +P + G+E
Sbjct: 6   SVLIVEDDPHVLLGCQQALTLEDIPCIGVGSAEEALAQVGDNFAGIVISDIRLPGIDGLE 65

Query: 83  LLKQIKAVDDKIPVIVITGHGDIPMAVEAVKMGACDFLEKPINPPQLLTLIKQHLELRR- 141
           LL ++K  D  +PV++ITGHGDI MAV A++ GA DF+EKP +P +L+ + ++ LE R  
Sbjct: 66  LLTRLKQRDRSLPVVLITGHGDISMAVGAMQKGAYDFMEKPFSPERLVDVARRALEQRSL 125

Query: 142 ----SFIEQKLLLSRSVKRELVGKSAQMEQIRSHVAQYALLNRHVVIVGESGCGRHTIAY 197
               S + ++L    S++  ++G+S  M+ +R  +A  A  + +V+I GE+G G+  +A 
Sbjct: 126 AREVSSLRRQLAERDSLEGRIIGRSPAMQNLRELIANVADTSANVLIEGETGTGKELVAR 185

Query: 198 LIHQ---------LTTNNGHLP----WVELVASAKTEWSTVEP----KVQESAGGTLLID 240
            +H          +  N G LP      E+       ++        K++ + GGTL +D
Sbjct: 186 CLHDFSRRHSKQFVALNCGGLPENLFESEIFGHEANAFTGAGKRRIGKIEHADGGTLFLD 245

Query: 241 HIELLSEEVQRNVVQSLLNQ--ERLNRPRT-----RVIAVIDQPPEQLIAQNQLLPELYY 293
            +E +   +Q  +++ L  +  ERL   ++     RVIA      ++     +   +LYY
Sbjct: 246 EVESMPLPLQIKLLRVLQERTLERLGSNQSVAVDCRVIAATKSDLDESSKAGEFRSDLYY 305

Query: 294 LLNQGQIDVPLLRQRPDDIAALFHYFLKQSCYKLGKPMPNVEPHYLALLRAHQWPGNVRE 353
            LN   +++P LR+R +DI  LF +F +QS  +  + +P ++   L+ L +H WPGNVRE
Sbjct: 306 RLNVVTLELPPLRERREDILQLFEHFTQQSALRFDRALPELDNQTLSNLMSHDWPGNVRE 365

Query: 354 LRNVAELYAIGIVKLAGKERLYNQEEMLSPLDELVDDYEKQVIEDALFLFSGRVADAANY 413
           LRNVAE +A+G+           Q    +   E V+ +E+ ++ DAL    G +  A+  
Sbjct: 366 LRNVAERFALGLPTFKKSGASAGQGLAFA---EAVEAFERNLLVDALQRSGGNLTQASQE 422

Query: 414 LQVPRKKLYLRMKKHGL 430
           L + +  L+ ++KK+GL
Sbjct: 423 LGMAKTTLFDKVKKYGL 439