Pairwise Alignments

Query, 439 a.a., sigma-54-dependent Fis family transcriptional regulator from Vibrio cholerae E7946 ATCC 55056

Subject, 458 a.a., sigma-54-dependent Fis family transcriptional regulator from Pseudomonas fluorescens SBW25

 Score =  228 bits (581), Expect = 3e-64
 Identities = 150/442 (33%), Positives = 233/442 (52%), Gaps = 37/442 (8%)

Query: 24  VLLIDDDQDVLDSYLHLMSIAGLTAKAVIDPTQAMSHIQPDWNGVVLLDMYMPQLHGMEL 83
           V+LIDDD  +  +    + +AGL    + + T   + +  DW GVV+ D+ MP + G+EL
Sbjct: 9   VVLIDDDPHLRQALCQTLDLAGLKVLTLGEATGLTARLSRDWPGVVVSDIRMPGMDGLEL 68

Query: 84  LKQIKAVDDKIPVIVITGHGDIPMAVEAVKMGACDFLEKPINPPQLLTLIKQHLELRRSF 143
           L ++   D  +PV++ITGHGD+P+AV+A++ GA DFLEKP     LL  +++ L LRR  
Sbjct: 69  LAELHGQDPDLPVLLITGHGDVPLAVQAMRAGAYDFLEKPFASDALLDSVRRALALRRLV 128

Query: 144 IEQ---KLLLS--RSVKRELVGKSAQMEQIRSHVAQYALLNRHVVIVGESGCGRHTIAYL 198
           ++    +L LS  + +   LVG S QM ++R  +   A     V+I+GE+G G+  +A  
Sbjct: 129 LDNRSLRLALSDRQQLSTRLVGHSPQMLRLREQIGALAATKADVLILGETGAGKEVVARA 188

Query: 199 IHQLTTNNGHLPWVELVASAKTEWSTVEP-------------------KVQESAGGTLLI 239
           +H L++     P+V + A A  E S VE                    K + + GGTL +
Sbjct: 189 LHDLSSRRSG-PFVAINAGALAE-SVVESELFGHEPGAFTGAQKRRIGKFEFANGGTLFL 246

Query: 240 DHIELLSEEVQRNVVQSLLNQ--ERLNRPR-----TRVIAVIDQPPEQLIAQNQLLPELY 292
           D IE +S +VQ  +++ L  +  ERL   +      R+IA   +   Q   Q +   +LY
Sbjct: 247 DEIESMSLDVQVKLLRLLQERVVERLGGNQLIPLDIRIIAATKEDLRQSADQGRFRADLY 306

Query: 293 YLLNQGQIDVPLLRQRPDDIAALFHYFLKQSCYKLGKPMPNVEPHYLALLRAHQWPGNVR 352
           Y LN   + +P LR+R +D   LF +F  ++  + G P+  ++P   ALL  H WPGNVR
Sbjct: 307 YRLNVAPLRIPPLRERGEDALMLFQHFADEASSRHGLPLHELQPGQRALLLRHSWPGNVR 366

Query: 353 ELRNVAELYAIGIVKLAGKERLYNQEEMLSP----LDELVDDYEKQVIEDALFLFSGRVA 408
           EL+N AE +A+G+              +L+     L E V+ +EK +I   L    G + 
Sbjct: 367 ELQNAAERFALGLELALDSSPDNPAAGVLTSTPGGLSEQVEQFEKSLIAAELTRPHGSMR 426

Query: 409 DAANYLQVPRKKLYLRMKKHGL 430
             A  L VPRK L+ +++KHGL
Sbjct: 427 SLAEALGVPRKTLHDKLRKHGL 448