Pairwise Alignments

Query, 439 a.a., sigma-54-dependent Fis family transcriptional regulator from Vibrio cholerae E7946 ATCC 55056

Subject, 470 a.a., Putative sensory histidine kinase YfhA from Hydrogenophaga sp. GW460-11-11-14-LB1

 Score =  173 bits (438), Expect = 1e-47
 Identities = 139/454 (30%), Positives = 214/454 (47%), Gaps = 36/454 (7%)

Query: 18  SKMKSTVLLIDDDQDVLDSYLHLMSIAGLTAKAVIDPTQAMSHIQPDWNGVVLLDMYMPQ 77
           S  ++ +L++DDD D+L      +  AG    +V     A+S +  +   +VL D+ +P 
Sbjct: 10  SAPRARLLVVDDDADMLRLLAMRLGAAGYQVTSVGSAEAALSQLDIERPQLVLSDVRLPG 69

Query: 78  LHGMELLKQIKAVDDKIPVIVITGHGDIPMAVEAVKMGACDFLEKPINPPQLLTLIKQHL 137
             G+ L  +I+A    +PVI++T HG IP AVEA   G   +L KP +  +LL  I Q L
Sbjct: 70  RDGLALFDEIRARHPSLPVILLTAHGTIPDAVEATARGVFTYLTKPYDAKELLEKIAQAL 129

Query: 138 ELRRSFIEQKLLLSRSVKRELVGKSAQMEQIRSHVAQYALLNRHVVIVGESGCGRHTIAY 197
            L      Q   +  + + E+V +S +M  + +     A  +  V++ G+SG G+  +A 
Sbjct: 130 ALGAP-AHQNTHVDEAWRSEIVSRSNRMADLLAEARMVAQSDASVLLRGDSGTGKEMLAR 188

Query: 198 LIHQ---------LTTNNGHLPWV----ELVASAKTEWSTV----EPKVQESAGGTLLID 240
            IH+         +  N G +P      EL    K  ++      +   Q + GGTLL+D
Sbjct: 189 AIHKASARANRPFIAVNCGAIPEALLESELFGHMKGAFTDAVANHKGLFQAADGGTLLLD 248

Query: 241 HIELLSEEVQRNVVQSLLNQERLNRP---------RTRVIAVIDQPPEQLIAQNQLLPEL 291
            I  +   +Q  +++ L  QER  RP           R+I+   +  E  +A  Q   +L
Sbjct: 249 EIGDMPPALQVKLLRVL--QERAVRPLGSSQSLPVNVRIISATHRDLEDAMAAGQFREDL 306

Query: 292 YYLLNQGQIDVPLLRQRPDDIAALFHYFLKQSCYKLGKPMPNVEPHYLALLRAHQWPGNV 351
           YY LN   + +P L +R +DIA L ++FL +   K GK      P  L  L    WPGNV
Sbjct: 307 YYRLNVVTLTLPTLAERREDIALLANHFLARLAAKYGKRSSGFAPEALKALTMAAWPGNV 366

Query: 352 RELRNVAE----LYAIGIVKLAGKERLYN--QEEMLSPLDELVDDYEKQVIEDALFLFSG 405
           R+L NV E    L    +V LA  +R       E+LS  D     +E++ + D L +  G
Sbjct: 367 RQLYNVVEQVCALSTTPLVSLALVQRALRTPSVEVLSFAD-AKQRFEREYLVDLLKMTDG 425

Query: 406 RVADAANYLQVPRKKLYLRMKKHGLEKDAFKARG 439
            VADAA   Q  R + Y  ++KH L    FK+ G
Sbjct: 426 NVADAARLAQRNRTEFYRLLQKHALTPGLFKSDG 459