Pairwise Alignments

Query, 439 a.a., sigma-54-dependent Fis family transcriptional regulator from Vibrio cholerae E7946 ATCC 55056

Subject, 460 a.a., Sigma-54 dependent response regulator from Hydrogenophaga sp. GW460-11-11-14-LB1

 Score =  149 bits (377), Expect = 1e-40
 Identities = 127/453 (28%), Positives = 216/453 (47%), Gaps = 46/453 (10%)

Query: 12  WLFWSYSKMKSTVLLIDDDQDVLDSYLHLMSIAG---LTAKAVIDPTQAMSHIQPDWNGV 68
           W  WS       +L++DD+Q +L+  +  ++      ++A +  D  Q +     D   +
Sbjct: 17  WPDWS-------ILIVDDEQGMLNFLVKTLAPRCHFVMSASSAEDGAQWLRGHHVD---L 66

Query: 69  VLLDMYMPQLHGMELLKQIKAVDDKIPVIVITGHGDIPMAVEAVKMGACDFLEKPINPPQ 128
           V+LD+ +P   G+  LK+++       VI+IT   D+  A+EA++ GA DF+ KP   PQ
Sbjct: 67  VILDISLPGKSGVVWLKELREQGFTGEVILITAFADLDTAIEALRAGASDFILKPFRVPQ 126

Query: 129 LLTLIKQHLEL----RRSFIEQKLLLSRSVKRE-LVGKSAQMEQIRSHVAQYALLNRHVV 183
           +L  +K   E     R +F+ ++ +++ +  R  LVG S+ M+Q+R  +A+ A +N  V+
Sbjct: 127 ILNAVKHCYERSRLRRENFVLRRAVVTSAPGRAALVGGSSAMQQLRESIARVAPVNSTVL 186

Query: 184 IVGESGCGRHTIAYLIHQLTTNNGHLPWV--------------ELVASAKTEWSTV---- 225
           + GESG G+  +A  +H L++  G  P+V              EL   AK  +S      
Sbjct: 187 LQGESGTGKELVARELHALSSRAGG-PFVPVNCAAVSPELIESELFGHAKGAFSGATRAR 245

Query: 226 EPKVQESAGGTLLIDHIELLSEEVQRNVVQSL-------LNQERLNRPRTRVIAVIDQPP 278
           +     + GGTL +D I  L   +Q  +++++       +  E+L     R++A  ++  
Sbjct: 246 DGLFHYAQGGTLFLDEIAELPLSIQATLLRAIEDLNIRPVGSEQLVPLNLRIVAATNRQL 305

Query: 279 EQLIAQNQLLPELYYLLNQGQIDVPLLRQRPDDIAALFHYFLKQSCYKLGKPMPNVEPHY 338
            + +A  +   +LY+ L    + +P LR+  +DIA L  +F+ Q    LG     +  H 
Sbjct: 306 SEEVAAGRFRKDLYFRLQVVDLALPPLREHKEDIAELVAHFIAQLAPSLGVEPLAISEHE 365

Query: 339 LALLRAHQWPGNVRELRNVAELYAI--GIVKLAGKERLYNQEEMLSPLDELVDDYEKQVI 396
           +  LR + WPGNVRELRN+ E   I   +   A    +  + E  S L   +   EK  I
Sbjct: 366 MDFLRQYDWPGNVRELRNLLERSLILGNLNVSALYPGVARRPETSSALPTDLHTLEKMHI 425

Query: 397 EDALFLFSGRVADAANYLQVPRKKLYLRMKKHG 429
              L    G    AA  L V R+ L  R+ + G
Sbjct: 426 LSVLDSVQGDKTRAAQLLGVSRRTLERRVAEWG 458