Pairwise Alignments

Query, 439 a.a., sigma-54-dependent Fis family transcriptional regulator from Vibrio cholerae E7946 ATCC 55056

Subject, 466 a.a., two-component system response regulator VfmH from Dickeya dadantii 3937

 Score =  158 bits (399), Expect = 4e-43
 Identities = 133/472 (28%), Positives = 226/472 (47%), Gaps = 68/472 (14%)

Query: 21  KSTVLLIDDDQDVLDSYLHLMSIAG--LTAKAVID--PTQAMSHIQPDWNGVVLLDMYMP 76
           K  +L++DDD  +L S   L+S+ G  +T  + ++  P Q   H   D++ ++L+DM   
Sbjct: 4   KQHILIVDDDAHILASLQMLLSMEGYQVTLASAVEQVPVQLSQH---DFD-LILMDMNYQ 59

Query: 77  Q-----LHGMELLKQIKAVDDKIPVIVITGHGDIPMAVEAVKMGACDFLEKPINPPQLLT 131
           +       G+ LL++IK  D+ +PV+ +TG G + +AV A++ GA DF++KP +  +LL 
Sbjct: 60  RDTTSGQEGLVLLEEIKRYDEYLPVVAMTGWGSVDIAVSAMQAGAVDFIQKPWDNERLLN 119

Query: 132 LIKQHLEL-------RRSFIEQKLL---LSRSVKRELVGKSAQMEQIRSHVAQYALLNRH 181
           +I+Q +         +R   E KLL   L  +   E V +SA M+Q+   V Q A    +
Sbjct: 120 VIRQQISFSLSQRSGKRLKEENKLLKLELEDNFNGEWVVESAPMKQLMRVVEQVAATETN 179

Query: 182 VVIVGESGCGRHTIAYLIHQLTTN-------------NGHLPWVELVASAKTEWSTVEP- 227
           ++I+GE+G G+  +A +IHQL+               N +L   E+    K  ++     
Sbjct: 180 ILILGENGTGKSLLARVIHQLSPRRDENMVSVNMGCINENLFESEMFGHVKGAFTDARES 239

Query: 228 ---KVQESAGGTLLIDHIELLSEEVQRNVVQSLLNQ--ERLNRPRT-----RVIAVIDQP 277
              + + +  GTL +D I  L    Q  +++ L  +  ER+   RT     R+IA  +  
Sbjct: 240 RVGRFELADKGTLFLDEIGNLPMTQQSKLLRILEERCFERVGSSRTLKTNCRIIAATNAE 299

Query: 278 PEQLIAQNQLLPELYYLLNQGQIDVPLLRQRPDDIAALFHYFLKQSCYKLGKPMPNVEPH 337
            +  +A+     +LYY  N  ++ VP L +R  DI  L   F+ +   K  KP P + P 
Sbjct: 300 LDVRVAEGTFRQDLYYRFNTIELRVPSLVERQQDIMPLALNFIDRYARKYNKPAPGLSPS 359

Query: 338 YLALLRAHQWPGNVRELRNVAELYAIGIVKLAGKERLYNQEEMLSPL------------- 384
             A L  + WPGN+REL ++ E      V L G  RL N +++   L             
Sbjct: 360 GQAALSGYHWPGNIRELSHLLE----RAVLLCGSSRL-NSDDIFPSLPTAPQKVAKAEPE 414

Query: 385 ---DELVDDYEKQVIEDALFLFSGRVADAANYLQVPRKKLYLRMKKHGLEKD 433
              D  + D E++++   +  F G    AA+ L + R   Y R++K+ +  +
Sbjct: 415 LACDATLADIEERLLCQRMAKFEGNAVKAAHSLGLSRSAFYRRLEKYKINHE 466