Pairwise Alignments

Query, 439 a.a., sigma-54-dependent Fis family transcriptional regulator from Vibrio cholerae E7946 ATCC 55056

Subject, 483 a.a., sigma-54 dependent transcriptional regulator from Brevundimonas sp. GW460-12-10-14-LB2

 Score =  160 bits (404), Expect = 1e-43
 Identities = 127/479 (26%), Positives = 221/479 (46%), Gaps = 70/479 (14%)

Query: 20  MKSTVLLIDDDQDVLDSYLHLMSIAGLTAKAVIDPTQAMSHIQPDWNG----VVLLDMYM 75
           M  T+L++DDD         + ++      AV+        I     G    ++LLDM M
Sbjct: 1   MAKTILVVDDDPT---QRRLIQAVLERDGNAVVHAASGGEAIDRMTRGGGADLILLDMVM 57

Query: 76  PQLHGMELLKQIKAVDDKIPVIVITGHGDIPMAVEAVKMGACDFLEKPINPPQLLTLIKQ 135
           P++ G+E L ++++     PVIV+T +G I M V+A++ GA DF  KP+ P +LL  ++ 
Sbjct: 58  PEMSGLECLAELRSAGINEPVIVLTANGGIDMVVKAMQAGAQDFFVKPVGPERLLVGVRN 117

Query: 136 HLELRRSFIEQKLLLSRSVKR----ELVGKSAQMEQIRSHVAQYALLNRHVVIVGESGCG 191
            ++++R   E   L  R   R    ++VG S  M  +++  A+ A  +  V+I GESG G
Sbjct: 118 AMQMKRLTAEVGRLTKRVQGRTSFDDIVGDSPPMRMVKALGARAAKSSIPVLITGESGVG 177

Query: 192 RHTIAYLIHQ---------LTTNNGHLP--WVELVASAKTEWSTVEP------KVQESAG 234
           +  IA  +H          +  N G LP   +E +     + +          K +E+ G
Sbjct: 178 KEVIARALHGASDRAGKPFVAVNCGALPANLIESILFGHEKGAFTGAVDKTLGKFREADG 237

Query: 235 GTLLIDHIELLSEEVQRNVVQSLLNQE-------RLNRPRTRVIAVIDQPPEQLIAQNQL 287
           GTL +D I  L  ++Q  ++++L   E       R  +   R+++  ++ P Q +     
Sbjct: 238 GTLFLDEIGELPLDMQVKLLRALQEGEIDPVGGKRPVKIDVRIVSATNRDPAQQVKDGAF 297

Query: 288 LPELYYLLNQGQIDVPLLRQRPDDIAALFHYFLKQSCYKLGKPMPNVEPHYLALLRAHQW 347
             +L+Y LN   I+ P LR R +DIA L  +F+ +   + GK +    P  LALL+   W
Sbjct: 298 REDLFYRLNVFPIEAPSLRDRREDIAPLVDHFIARFNAEEGKRIAGCAPETLALLQGFDW 357

Query: 348 PGNVRELRNV------------------------------AELYAIGIVKLAGKERLYNQ 377
           PGNVR+L N                               A+   +     A  +     
Sbjct: 358 PGNVRQLENAVFRAIVLADAPFLQPHDFPAISGVAAPMPDAQPLQVATAAGAQTDAAAQV 417

Query: 378 EEMLSPLDE-----LVDDYEKQVIEDALFLFSGRVADAANYLQVPRKKLYLRMKKHGLE 431
           ++ +  LDE      ++D E+ +I+ A+ +++G +++ A  L + R  LY ++++ GLE
Sbjct: 418 DQPIRILDERGHLRTLEDIERDLIQHAIEVYAGHMSEIARRLGIGRSTLYRKVREQGLE 476