Pairwise Alignments

Query, 439 a.a., sigma-54-dependent Fis family transcriptional regulator from Vibrio cholerae E7946 ATCC 55056

Subject, 468 a.a., sigma-54 dependent transcriptional regulator from Brevundimonas sp. GW460-12-10-14-LB2

 Score =  169 bits (427), Expect = 2e-46
 Identities = 123/454 (27%), Positives = 221/454 (48%), Gaps = 48/454 (10%)

Query: 22  STVLLIDDDQDVLDSYLHLMSIAGLTAKAVIDPTQAMSHIQPDWNGVVLLDMYMPQ--LH 79
           S +L++DD+ D+ D    L+   G   +   +  +A++ I+     + +LD++M    L 
Sbjct: 6   SDILVVDDEADIRDLVSGLLEDEGHAVRVAANSDEALAAIRARKPSLAILDIWMQGGGLD 65

Query: 80  GMELLKQIKAVDDKIPVIVITGHGDIPMAVEAVKMGACDFLEKPINPPQLLTLIKQHLE- 138
           G+ELL+ +K +D  +PV++I+GHG+I  AV A+K GA DF+EKP    +L+ ++++ +E 
Sbjct: 66  GLELLEVVKELDPDLPVVMISGHGNIETAVTALKRGAYDFIEKPFKSDRLVVVVERAIEA 125

Query: 139 --LRRSFIEQKLLLSRSVKRELVGKSAQMEQIRSHVAQYALLNRHVVIVGESGCGRHTIA 196
             LRR    ++L  +      L+G+S   + +RS +A+ A  N  V+I G +G G+  +A
Sbjct: 126 ATLRRE--NRRLRAATMTPSGLIGRSQAAQALRSTIAKVAQANSRVLIAGPAGSGKELVA 183

Query: 197 YLIHQLTTNNGHLPWVELVASAKT-----------EWSTVEPK----VQESAGGTLLIDH 241
             IH+  +      +V + A+  T           E     P+     + +  GTL +D 
Sbjct: 184 RQIHE-ASPRARAEFVAISAAGMTPERLDVELFGEEGQDGRPRKIGVFERAHNGTLYLDE 242

Query: 242 IELLSEEVQRNVVQSLLNQ-------ERLNRPRTRVIAVIDQPPEQLIAQNQLLPELYYL 294
           I  +  E Q  +++ L++Q       E+  +   RV+    +  +  IA+ +   +L++ 
Sbjct: 243 ISDMPRESQSRILRVLVDQRFRRVGGEQDVQVDVRVVTSTSRDLKAEIAEGRFREDLFHR 302

Query: 295 LNQGQIDVPLLRQRPDDIAALFHYFLKQSCYKLGKPMPNVEPHYLALLRAHQWPGNVREL 354
           LN   I VP L +R +DIA L  YF+       G P   V    +A+L+ H WPGN+R+L
Sbjct: 303 LNVVPIRVPPLSERREDIAELVEYFVDTISASQGLPKRIVGDDAVAVLQVHPWPGNIRQL 362

Query: 355 RNVAE---LYAIG---------------IVKLAGKERLYNQEEMLSPLDELVDDYEKQVI 396
           RN  E   + A G                    G   L  +  +  PL E  + +E++ +
Sbjct: 363 RNNIERLLILATGDPAETITADMLPQEVATSNGGTANLGGERTIALPLREAREVFEREYL 422

Query: 397 EDALFLFSGRVADAANYLQVPRKKLYLRMKKHGL 430
              +  F G ++  A ++ + R  L+ ++K  G+
Sbjct: 423 AAQIMRFGGNISRTAAFIGMERSALHRKLKSLGV 456