Pairwise Alignments

Query, 439 a.a., sigma-54-dependent Fis family transcriptional regulator from Vibrio cholerae E7946 ATCC 55056

Subject, 446 a.a., C4-dicarboxylate transport transcriptional regulatory protein DctD from Azospirillum sp. SherDot2

 Score =  201 bits (511), Expect = 4e-56
 Identities = 142/440 (32%), Positives = 229/440 (52%), Gaps = 38/440 (8%)

Query: 24  VLLIDDDQDVLDSYLHLMSIAGLTAKAVIDPTQAMSHIQPDWNGVVLLDMYMPQLHGMEL 83
           VL+++DD +V       + +  +  +AV    +A   +   + G+V+ D+ +P + GM L
Sbjct: 11  VLIVEDDPNVSLGCQQALELEDIPTEAVDSAEKARRLVAEGFPGIVVTDIRLPGMDGMAL 70

Query: 84  LKQIKAVDDKIPVIVITGHGDIPMAVEAVKMGACDFLEKPINPPQLLTLIKQHLELRRSF 143
           L ++ A D  +PV+++TGHGD+ MAV+A+K+GA DF+EKP +P  L+ ++++ L+ RR  
Sbjct: 71  LAELLASDPDLPVVLMTGHGDVSMAVQAMKLGAHDFIEKPFSPDYLVEVVRRALDKRRLT 130

Query: 144 IEQKLLLSR-----SVKRELVGKSAQMEQIRSHVAQYALLNRHVVIVGESGCGRHTIAYL 198
           +E + L +R     S++  LVG S QM ++R  +   A     V+I GE+G G+   A  
Sbjct: 131 LEVRDLRARLQNRDSIEARLVGGSPQMARVRRLIGDLASSAADVLIHGETGSGKELAARC 190

Query: 199 IHQ---------LTTNNGHLPW----VELVASAKTEWSTVEP----KVQESAGGTLLIDH 241
           +H          +  N G LP      E+       ++        KV+ ++GGTL +D 
Sbjct: 191 LHDASPRRGGNFVAINCGGLPESLIDSEIFGHEAGAFTGAGKRRVGKVEHASGGTLFLDE 250

Query: 242 IELLSEEVQRNVVQSLLNQ--ERL--NRP---RTRVIAVIDQPPEQLIAQNQLLPELYYL 294
           IE +   VQ   ++ L  +  ERL  N P     RVIA       +L  + Q   +LYY 
Sbjct: 251 IESMPMPVQIKFLRVLQERTLERLGSNTPVHVDCRVIAATKVDLRELADRGQFRADLYYR 310

Query: 295 LNQGQIDVPLLRQRPDDIAALFHYFLKQSCYKLGKPMPNVEPHYLALLRAHQWPGNVREL 354
           LN   + +P LR R +DI  LF  F  Q+  + G+P+P  +   +  L A+ WPGNVREL
Sbjct: 311 LNVANLPLPPLRDRREDIPLLFEQFTLQAAARHGRPVPPPDAERMRRLMAYDWPGNVREL 370

Query: 355 RNVAELYAIGIVK----LAGKERLYNQEEMLSPLDELVDDYEKQVIEDALFLFSGRVADA 410
            NVA+   +GI +     A      N+     PL + V+ +E+ +I D L      +A A
Sbjct: 371 HNVADRCVLGIEQGFPPFATSHPAANR-----PLAQAVEAFERALIADTLRRTDHSLARA 425

Query: 411 ANYLQVPRKKLYLRMKKHGL 430
           A  LQV +  L+ +++K+GL
Sbjct: 426 AEELQVAKTTLHDKIRKYGL 445