Pairwise Alignments

Query, 439 a.a., sigma-54-dependent Fis family transcriptional regulator from Vibrio cholerae E7946 ATCC 55056

Subject, 471 a.a., Regulatory protein LuxO from Azospirillum sp. SherDot2

 Score =  144 bits (362), Expect = 8e-39
 Identities = 121/452 (26%), Positives = 198/452 (43%), Gaps = 53/452 (11%)

Query: 24  VLLIDDDQDVLDSYLHLMSIAGLTAKAVIDPTQAMSHIQPDWNGVVLLDMYMPQLHGMEL 83
           VLLI+D   +   Y   +     T  +V     A++ +      VVLLD+ +P ++GME+
Sbjct: 8   VLLIEDTPSLARVYAEYLKKESHTVISVETGADALAQLNDGAPMVVLLDLQLPDMNGMEV 67

Query: 84  LKQIKAVDDKIPVIVITGHGDIPMAVEAVKMGACDFLEKPINPPQLLTLIK---QHLELR 140
           LK+I A      VIVIT HG +  AVEA++ GA DFL KP +  +L+  ++   + L L 
Sbjct: 68  LKRIDAQALPCAVIVITAHGSVKAAVEAMRYGAYDFLVKPFSADRLVVTVRNAMERLRLA 127

Query: 141 RSFIEQKLLLSRSVKRELVGKSAQMEQIRSHVAQYALLNRHVVIVGESGCGRHTIAYLIH 200
           +     +  L+R+     +G S  M+ +   V   A     V I GESG G+   A  IH
Sbjct: 128 QLVDTFEKDLNRARYHGFIGSSLAMQAVYRIVDSAASSRATVFITGESGTGKEVCAEAIH 187

Query: 201 Q---------LTTNNGHLP----WVELVASAKTEW----STVEPKVQESAGGTLLIDHIE 243
           +         +  N G +P      E+    K  +    S  E     + GGTL +D I 
Sbjct: 188 RQSQRASKPFIAINCGAIPKDLMESEIFGHVKGSFTGAVSDREGAAARADGGTLFLDEIC 247

Query: 244 LLSEEVQRNVVQSL-------LNQERLNRPRTRVIAVIDQPPEQLIAQNQLLPELYYLLN 296
            L+ ++Q  +++ +       +   +L +   R++   ++ P + + + +   +LYY L+
Sbjct: 248 ELAPDLQTKLLRFIQTGTFTPVGGSKLEKVDLRIVCATNRDPLREVEEGRFREDLYYRLH 307

Query: 297 QGQIDVPLLRQRPDDIAALFHYFLKQSCYKLGKPMPNVEPHYLALLRAHQWPGNVRELRN 356
              I +P LR+R DD+  +  ++L +   +  K      P     LR + WPGNVR+L+N
Sbjct: 308 VIPIHLPPLREREDDVLEIARHYLAEFAKEEKKGFTRFSPQTEHALRHYHWPGNVRQLQN 367

Query: 357 VAELYAI-------------------------GIVKLAGKERLYNQEEMLSP-LDELVDD 390
           V  + A+                              AG          LSP   + + +
Sbjct: 368 VVRIVAVLHDGDTVTPEMLPSPLGTPQPLQILAAAAPAGAAAAPRPHVPLSPDAIKPLWE 427

Query: 391 YEKQVIEDALFLFSGRVADAANYLQVPRKKLY 422
            EK  IEDA+    G +  AA  LQ+    +Y
Sbjct: 428 VEKDAIEDAIAACDGNIPRAAALLQISASTIY 459