Pairwise Alignments

Query, 439 a.a., sigma-54-dependent Fis family transcriptional regulator from Vibrio cholerae E7946 ATCC 55056

Subject, 446 a.a., Quorum-sensing regulator protein F from Alteromonas macleodii MIT1002

 Score =  144 bits (363), Expect = 6e-39
 Identities = 124/445 (27%), Positives = 203/445 (45%), Gaps = 41/445 (9%)

Query: 24  VLLIDDDQDVLDSYLHLMSIAGLTAKAVIDPTQAMSHIQPDWNGVVLLDMYMPQLHGMEL 83
           +LL+DDD+ +L      +   G    AV D   A+  +Q +   VVL D+ MP L G+ L
Sbjct: 11  LLLVDDDKSLLRLLTIRLEGEGYEVTAVEDGQSALRKLQNENYDVVLSDLRMPGLDGLSL 70

Query: 84  LKQIKAVDDKIPVIVITGHGDIPMAVEAVKMGACDFLEKPINPPQLLTLIKQHLELRRSF 143
            ++I  +   IPVI++T HG I  AV A + G   FL KP++  +L  L      L+++ 
Sbjct: 71  FEEIMGIRKDIPVILMTAHGTIADAVAATQRGVFGFLPKPVDHDELRAL------LQKAL 124

Query: 144 IEQKLLLSRSVKRELVGKSAQMEQIRSHVAQYALLNRHVVIVGESGCGRHTIAYLIHQLT 203
            + +        ++++ +S +M  +     + A     V+I G SG G+  +A  IH+  
Sbjct: 125 SQSQAAQPGDWAKDIITRSPEMLNVLDQAFRIAQREVSVLISGASGTGKELLANAIHK-A 183

Query: 204 TNNGHLPWV--------------ELVASAKTEWS---TVEPKV-QESAGGTLLIDHIELL 245
           +N    P+V              EL   AK  ++      P + +E+ GGTL +D I  +
Sbjct: 184 SNRSDKPFVAINCGALPENLLESELFGHAKGAFTGAVAAHPGLFREADGGTLFLDEIGDM 243

Query: 246 SEEVQRNVVQSLLNQERLNRP---------RTRVIAVIDQPPEQLIAQNQLLPELYYLLN 296
              +Q  ++++L  QER  RP           R+I+   +   + + +     +LYY LN
Sbjct: 244 PMTLQVKLLRAL--QERQIRPVGSSKHVDIDVRIISATHKDLHKEMEEGTFREDLYYRLN 301

Query: 297 QGQIDVPLLRQRPDDIAALFHYFLKQSCYKLGKPMPNVEPHYLALLRAHQWPGNVRELRN 356
              + +P L+ R +DI  L    L+QS  + G  +       +  L    WPGNVR+L N
Sbjct: 302 VVNLKLPSLKSRSEDIPLLARSLLQQSAQRHGVNVSQFSDDAMQQLVTSSWPGNVRQLVN 361

Query: 357 VAE----LYAIGIVKLAGKERLYNQEEMLSP-LDELVDDYEKQVIEDALFLFSGRVADAA 411
           V E    L    ++ L   E+  +  +   P L E  D +E+Q +   L +  G V  AA
Sbjct: 362 VVEQCVALTQTPVIPLHLVEQALSATKQSWPTLTEARDAFEQQYLHKLLKMTDGNVTRAA 421

Query: 412 NYLQVPRKKLYLRMKKHGLEKDAFK 436
                 R  ++  MKKH L+   F+
Sbjct: 422 ELAGRNRTDMHKLMKKHELDAADFR 446