Pairwise Alignments

Query, 439 a.a., sigma-54-dependent Fis family transcriptional regulator from Vibrio cholerae E7946 ATCC 55056

Subject, 454 a.a., two component response regulator from Agrobacterium fabrum C58

 Score =  171 bits (432), Expect = 6e-47
 Identities = 127/457 (27%), Positives = 225/457 (49%), Gaps = 49/457 (10%)

Query: 20  MKSTVLLIDDDQDVLDSYLHLMSIAGLTAKAVIDPTQAMSHIQPDWNGVVLLDMYMP--Q 77
           M S +L++DD+ D+ +    ++S  G   +   D   A++ I      ++ LD++M   +
Sbjct: 1   MASDILVVDDEADIREIVAGILSDEGHETRMAFDSDSALAAISERVPRLIFLDIWMQGSK 60

Query: 78  LHGMELLKQIKAVDDKIPVIVITGHGDIPMAVEAVKMGACDFLEKPINPPQLLTLIKQHL 137
           L G+ LL +IK+   +IPV++I+GHG+I  AV A+K GA DF+EKP    +L+ + ++ L
Sbjct: 61  LDGLALLDEIKSRHPEIPVVMISGHGNIETAVNAIKRGAFDFIEKPFKADRLILIAERAL 120

Query: 138 E---LRRSFIEQKLLLSRSVKRELVGKSAQMEQIRSHVAQYALLNRHVVIVGESGCGRHT 194
           E   L+R   E K     +V  ELVG S  + Q+R  + + A  N  ++I+G SG G+  
Sbjct: 121 ENSKLKREVQELKKRTGDAV--ELVGASLAVSQLRQTIDRVAPTNSRIMILGPSGSGKEL 178

Query: 195 IAYLIHQLTTNNGHLPWVEL-----------VASAKTEWSTVEPK----VQESAGGTLLI 239
           +A ++H+  ++    P+V L           +A   TE    +P+    ++E+  G L +
Sbjct: 179 VARMVHK-KSSRATGPFVALNAATITPDRMEIALFGTEGLPGQPRKVGALEEAHRGVLYL 237

Query: 240 DHIELLSEEVQRNVVQSLLNQ--ERLN-----RPRTRVIAVIDQPPEQLIAQNQLLPELY 292
           D +  +  E Q  +++ L++Q  ER+      +   R+I+      E LIA+ Q   +LY
Sbjct: 238 DEVGEMPRETQNKILRVLVDQQFERVGGGKRVKVDVRIISSTAHHLESLIAEGQFREDLY 297

Query: 293 YLLNQGQIDVPLLRQRPDDIAALFHYFLKQSCYKLGKPMPNVEPHYLALLRAHQWPGNVR 352
           + L    + VP L +R +DI  L   F++Q   + G     +    +A+L+ H WPGN+R
Sbjct: 298 HRLAVVPVKVPALSERREDIPFLVDMFMRQISEQAGIRPRKIGDDAMAVLQTHDWPGNIR 357

Query: 353 ELRNVAELYAIGIVKLAGKERLY-------------------NQEEMLSPLDELVDDYEK 393
           +LRN  E   I      G+  +                    +Q  M  PL E  + +E+
Sbjct: 358 QLRNNIERLMILARPEGGEAPISADMLPSDIGDMLPKISAQGDQHIMTLPLREAREMFER 417

Query: 394 QVIEDALFLFSGRVADAANYLQVPRKKLYLRMKKHGL 430
             +   +  F G ++  A ++ + R  L+ ++K  G+
Sbjct: 418 DYLMAQINRFGGNISRTAEFVGMERSALHRKLKSLGV 454