Pairwise Alignments

Query, 439 a.a., sigma-54-dependent Fis family transcriptional regulator from Vibrio cholerae E7946 ATCC 55056

Subject, 448 a.a., two component response regulator from Agrobacterium fabrum C58

 Score =  199 bits (507), Expect = 1e-55
 Identities = 131/442 (29%), Positives = 226/442 (51%), Gaps = 33/442 (7%)

Query: 22  STVLLIDDDQDVLDSYLHLMSIAGLTAKAVIDPTQAMSHIQPDWNGVVLLDMYMPQLHGM 81
           S VLLIDD++++  S    + ++G     +     A+  I   ++GVV+ D+ MP + GM
Sbjct: 4   SRVLLIDDEEELRFSTAQALELSGFAVTMLASAEHALELIGYSFDGVVVSDIRMPGMDGM 63

Query: 82  ELLKQIKAVDDKIPVIVITGHGDIPMAVEAVKMGACDFLEKPINPPQLLTLIKQHLELRR 141
            LL++++ +D +IPVI++TGHGD+ +AV A++ GA DF+EKP  P  L  +IK+  + R 
Sbjct: 64  TLLQKVRELDPEIPVILMTGHGDVQLAVNAMRNGAYDFIEKPFTPQYLAGIIKRANDRRA 123

Query: 142 SFIEQKLLLSRSVKRE-----LVGKSAQMEQIRSHVAQYALLNRHVVIVGESGCGRHTIA 196
             +E + L + + K +     L G++  M  +R  +      +   +IVG++G G+  +A
Sbjct: 124 LVLENRRLKAVAGKHDDLETRLPGRTQVMVDLRYRIRAIGATDADTLIVGDTGAGKEVVA 183

Query: 197 YLIHQLTTNNGHLPWVELVASAKTEWSTVEP-------------------KVQESAGGTL 237
             +H ++    + P+V +  +A  + + +E                    K + + GGT+
Sbjct: 184 RALHDISA-RANRPFVAINCAALPQ-TLIESELFGHEAGAFPGALRSRYGKFEHARGGTI 241

Query: 238 LIDHIELLSEEVQRNVVQSLLNQ--ERLNRPRT-----RVIAVIDQPPEQLIAQNQLLPE 290
           L+D I  +  E+Q   ++ L  +   RL    T     R IA      EQ +A  +   +
Sbjct: 242 LLDEIGSMPFELQGRFLRVLQERVITRLGSNETVELDVRFIATSKVDLEQEVAAGRFRAD 301

Query: 291 LYYLLNQGQIDVPLLRQRPDDIAALFHYFLKQSCYKLGKPMPNVEPHYLALLRAHQWPGN 350
           L Y LN   + VP L QR  DI  LF + ++++  + G+   +V  H L+ +   +WPGN
Sbjct: 302 LLYRLNVATLLVPSLSQRSADIPLLFLHLVREAAARYGREDMDVPQHLLSAVSLREWPGN 361

Query: 351 VRELRNVAELYAIGIVKLAGKERLYNQEEMLSPLDELVDDYEKQVIEDALFLFSGRVADA 410
           VRELRN A+ + +G+     +  L   ++  S L   V  YEK +I  A+ +  G +   
Sbjct: 362 VRELRNAADRFVLGLESDVSEVSLALDDDGTSTLAPRVAAYEKSLIAHAIAVHGGNLKSV 421

Query: 411 ANYLQVPRKKLYLRMKKHGLEK 432
              L + RK LY +M+K+GL +
Sbjct: 422 YESLGISRKTLYEKMQKYGLHR 443