Pairwise Alignments

Query, 642 a.a., GGDEF domain-containing protein from Vibrio cholerae E7946 ATCC 55056

Subject, 964 a.a., PAS domain S-box protein from Magnetospirillum magneticum AMB-1

 Score =  160 bits (406), Expect = 2e-43
 Identities = 103/295 (34%), Positives = 152/295 (51%), Gaps = 11/295 (3%)

Query: 350 NSLDSKLARAAMDGMS-AVVITDRQNRIIKVNNEFTRLSGYTFEDVKGKQPSIFASGLHK 408
           N+   +LA +  DG S A+ ITD +  I+ VN  F RL+GY  E++ G+ P+I  SG H 
Sbjct: 385 NAEQLQLAASVFDGTSEAIAITDAEGLIVSVNKPFCRLTGYELEELVGRNPNILKSGRHD 444

Query: 409 VEFYMQMWKALQDNGVWEGEVINKRKDGESITEILRIQSIRDEDNVIQFYVASFVDISHR 468
            +FY +MW+++   G W GEV N+RK+GE   E L I +I D    IQ  VA   DI+ +
Sbjct: 445 SDFYAEMWRSITATGNWSGEVWNRRKNGEVYPERLTISTIYDAKGQIQRRVAIASDITEQ 504

Query: 469 KALENRLRELSEKDALTDLWNRRKFDQTISLECAKRRRYPDQAQSCLAIIDIDHFKRIND 528
           K  E  +   +  D LT L NRR+F   +  + A+    PD     L +ID+D FK +ND
Sbjct: 505 KKAEEIIWHQANHDLLTGLPNRRRFLDLLRKDLARADSLPDMVVGVL-LIDLDRFKEVND 563

Query: 529 KFGHNEGDLVLRTVAKGIQDQLRESDFIARIGGEEFAI-IFPYTSIEEAEQVLNRVRLHI 587
             GH  GD +L  VA+ I+  L E D I  +G +EF + +    S    E  +  +R+ I
Sbjct: 564 TLGHAIGDQLLLEVARRIRSCLSEKDVIGHLGADEFIVSMIDDLSTTRLEAAVAAIRMVI 623

Query: 588 ASLHHQ-----QVTLSGGVTDVCT---SPDQSYKRADLALYESKTSGRNQISVLT 634
           A           +T S G+T   T     ++  +  D A+ E+K  GR++    T
Sbjct: 624 AEPFRSGSDTLHLTASIGITAYPTDGGDMEELLRNVDQAVREAKNGGRDRSCCFT 678