Pairwise Alignments

Query, 642 a.a., GGDEF domain-containing protein from Vibrio cholerae E7946 ATCC 55056

Subject, 569 a.a., PAS domain S-box protein from Magnetospirillum magneticum AMB-1

 Score =  163 bits (413), Expect = 2e-44
 Identities = 103/279 (36%), Positives = 153/279 (54%), Gaps = 11/279 (3%)

Query: 366 AVVITDRQNRIIKVNNEFTRLSGYTFEDVKGKQPSIFASGLHKVEFYMQMWKALQDNGVW 425
           AV++TDR+N I  VN  FTR++G+  ++V G+ PSI +SG H   FY  MW+ L   G W
Sbjct: 284 AVMVTDRRNHIKLVNPAFTRITGFAPDEVIGRSPSILSSGRHDKAFYAAMWEQLSSGGSW 343

Query: 426 EGEVINKRKDGESITEILRIQSIRDEDNVIQFYVASFVDISHRKALENRLRELSEKDALT 485
            GEV N+ K GE   E L I +IRD       YVA+F +I+ RK  E R+R  +E DALT
Sbjct: 344 SGEVWNRAKSGEVFPEWLSIVAIRDRAGEAHGYVATFSNIAERKRRETRMRWQAEHDALT 403

Query: 486 DLWNRRKFDQTISLECAKRRRYPDQAQSCLAIIDIDHFKRINDKFGHNEGDLVLRTVAKG 545
            L NR  F+  +++  ++ R+    ++  +  I ++ FK + D  G   GD VL  +AK 
Sbjct: 404 GLANRVHFETALAVALSQARQ--TGSELAVLFISLEGFKEVADTLGRAIGDPVLSVMAKR 461

Query: 546 IQDQLRESDFIARIGGEEFAIIFPYTSIE-EAEQVLNRVRLHIAS---LHHQQVTLSGGV 601
           ++  +R  D +AR+GG+EFA+I P    E  A  V  ++   +A    L + Q  +S  V
Sbjct: 462 LRQIVRADDVVARLGGDEFAVIIPMLQHEGNARFVAGKIVSCLAEPVILGNTQAQISANV 521

Query: 602 TDVC-----TSPDQSYKRADLALYESKTSGRNQISVLTA 635
                    TSP +    AD A+  SK +GR+ I++  A
Sbjct: 522 GVAIHPHHGTSPKELLSAADHAIRCSKQAGRSGIAMAEA 560