Pairwise Alignments

Query, 642 a.a., GGDEF domain-containing protein from Vibrio cholerae E7946 ATCC 55056

Subject, 831 a.a., PAS domain S-box protein from Magnetospirillum magneticum AMB-1

 Score =  145 bits (367), Expect = 5e-39
 Identities = 99/289 (34%), Positives = 142/289 (49%), Gaps = 24/289 (8%)

Query: 360 AMDGMSAVVITDRQNRIIKVNNEFTRLSGYTFEDVKGKQPSIFASGLHKVEFYMQMWKAL 419
           A +GM A   TD  NRII VN  FT ++GY  E+  G  P + +SG H   FY +MW  L
Sbjct: 41  AFEGMFA---TDAANRIIAVNPAFTAITGYAAEEAIGNDPRMLSSGFHDPAFYQEMWDQL 97

Query: 420 QDNGVWEGEVINKRKDGESITEILRIQSIRDEDNVIQFYVASFVDISHRKALENRLRELS 479
              G W+GEV+++ KDG  +   L I S R  D  +   +A F D++  +    +L + S
Sbjct: 98  STTGQWQGEVVDRHKDGRPVRLWLSITSQRGADGKVARRIAVFRDVTEARETAEQLWQRS 157

Query: 480 EKDALTDLWNRRKFDQTI--SLECAKRRRYPDQAQSCLAIIDIDHFKRINDKFGHNEGDL 537
             D LT+L NR  F   +  +L  A R    + ++  +  I +D FK IND  GH  GD 
Sbjct: 158 NFDPLTELPNRNLFLDRLLQALVLAGR----EGSKVAMLFIGLDGFKNINDSLGHWIGDK 213

Query: 538 VLRTVAKGIQDQLRESDFIARIGGEEFAIIFP-YTSIEEAEQVLNRV-----RLHIASLH 591
           VL+  A+  Q+ LR+ D  AR GG+EF ++     +  E E V+  V        +   H
Sbjct: 214 VLQEAARRFQNCLRQGDTAARFGGDEFTVVLSGVRATAEVEAVIRSVLEVLQEPFVVEHH 273

Query: 592 HQQVTLSGGVTDVCTSP------DQSYKRADLALYESKTSGRNQISVLT 634
           H  ++ S G   VC  P      D   + A  AL ++K +GRN     T
Sbjct: 274 HILISCSIG---VCMWPGDGEDVDSLMRNATAALQQAKQAGRNTFRFFT 319