Pairwise Alignments

Query, 612 a.a., protein translocase subunit SecD from Vibrio cholerae E7946 ATCC 55056

Subject, 622 a.a., preprotein translocase subunit SecD from Pseudomonas simiae WCS417

 Score =  407 bits (1045), Expect = e-118
 Identities = 236/621 (38%), Positives = 364/621 (58%), Gaps = 27/621 (4%)

Query: 13  LINHYSAWKYVVLVTTIIILTLSAIPTWYGEQPSIQLQSKDATSVLR--NVPELTQLLNK 70
           ++N Y  WKYV+++  + I  + + P  Y + P+IQ+     T  +   ++   ++ LN 
Sbjct: 1   MLNKYPLWKYVLILAVLAIGFIYSAPNLYPDDPAIQISGASTTLQVNQADLERASKALND 60

Query: 71  QNIQ--ADEITQQGDNTTLVFANETQQSQARNALDALVKEGDTITYSYVSVAPKWLGNLG 128
             IQ  A  +        L    +  Q  A++ +  ++ +   +  +     P+WL ++G
Sbjct: 61  AGIQVKAATLAAGAKGGLLRLTKQEDQLPAKDVVRKVMGDDYVVALNLAQTTPQWLRSIG 120

Query: 129 FSPIKLGLDLRGGVQFLLNVDVDKAFQEQRDSMMDAVKDSLRAERLRGVVVQAMGNDAFE 188
             P+KLGLDL GGV FLL VD+DKA   +       VK  LR ERLR   +  + N A +
Sbjct: 121 AHPMKLGLDLSGGVHFLLEVDMDKALDARLKVYEGDVKSLLRKERLRYRSLPQL-NGAIQ 179

Query: 189 VKTEQPQALSHVRKYLQENYRGWEI----RQGSDQLQVQPSQQNKSEFQTATIQQNLKIM 244
           +      +    R  +++N+  ++I      G   L++  S    +E +  +I+QNL  +
Sbjct: 180 LGFSDEASREQARALIRKNFNDFDIVPADLNGQAVLRLAMSPAKIAEIREYSIKQNLTTV 239

Query: 245 RDRIEELGITEALVQRQGEHAIRIELPGVQDPSQAKNVIGATASLAFYEAKSPTDARSY- 303
           R+R+ ELG+ E +VQRQG + I +ELPGVQD ++AK ++G TA+L F  A  P   R+  
Sbjct: 240 RNRVNELGVAEPIVQRQGANRIVVELPGVQDTAEAKRILGKTANLEFRLAAEPGATRATA 299

Query: 304 DDLILEDGNGRPVILAKRPVLSGEHIVNARAGVDNMGMSEVNISLDHAGGKIMSDFSGKH 363
           ++    +GN  P ++ +  +++G+ + +A+AG    G  EVNI LD  GG++MS  +  +
Sbjct: 300 EEFEFREGNRPPALIERGLIITGDQVTDAKAGFGEHGTPEVNIRLDGHGGELMSRATRSN 359

Query: 364 IGKPMATVYREYKT--------------NARGETVRSEK-VISVATIQSQLGSQFRITGA 408
           +G+ MA ++ E +               +   +T + EK +IS+ATIQS LG+QFRITG 
Sbjct: 360 VGRSMAVIFIEQRPITTYTKQMVNGVEKDVPVQTFKEEKKIISLATIQSPLGAQFRITGL 419

Query: 409 GSMEEAQQLALLLRAGSLTAPVTIVEERTIGASLGEENIANGFAALALGMAMTLTFMALW 468
               E+ +LALLLRAG L AP+   EERTIG SLG +NI  G  A   GM     F+   
Sbjct: 420 NGQGESSELALLLRAGGLAAPMYFAEERTIGPSLGADNITKGVDAALWGMLFVSLFIIAI 479

Query: 469 YRRLGWVANVALLVNMACLLGLIALLPGAVLTLPGIAGLVLTVGMAVDTNVLIFERIRDK 528
           YR  G +A VAL  NM  LL L++LL GA LTLPGIAG+VLT+GMAVD NVLIF RIR++
Sbjct: 480 YRFFGVIATVALAGNMVMLLALMSLL-GATLTLPGIAGIVLTMGMAVDANVLIFSRIREE 538

Query: 529 LSEGRNFAQAIDTGFDSAFSTILDANITTMITAVILYSIGNGPIQGFALTLGLGLLTSMF 588
           ++ G    +AI+ GF  AF+ ILD+N+TT++   IL+++G GP++GFA+T+ LG+ TSMF
Sbjct: 539 IAAGMTVQRAINEGFGRAFTAILDSNLTTLLVGGILFAMGTGPVKGFAVTMSLGIFTSMF 598

Query: 589 SGVFASRALINLVW-GRDTRR 608
           + +  +RA++NL++ GRD ++
Sbjct: 599 TAIMVTRAMVNLIFGGRDFKK 619