Pairwise Alignments

Query, 612 a.a., protein translocase subunit SecD from Vibrio cholerae E7946 ATCC 55056

Subject, 533 a.a., Protein translocase subunit SecD from Sphingobium sp. HT1-2

 Score =  239 bits (610), Expect = 2e-67
 Identities = 163/499 (32%), Positives = 263/499 (52%), Gaps = 38/499 (7%)

Query: 132 IKLGLDLRGGVQFLLNVDVDKAFQEQRDSMMDAVKDSLRAERLR---GVVVQAMGNDAFE 188
           + LGLDL GG   LL        +++  +M + V+  LR    +   G +    G  +F 
Sbjct: 44  VNLGLDLAGGSHLLLEASTQDVAKQRLANMEEQVRTELRRGETKIAIGDISSRDGKLSFM 103

Query: 189 VK--TEQPQALSHVRKYLQ----ENYRGWEIRQ-GSDQLQVQPSQQNKSEFQTATIQQNL 241
           V+  +E   A+  +R   Q       R + +    S  + + P+Q        + +Q   
Sbjct: 104 VRNPSEVDAAVERIRPLTQGAGLTGQRDFNVEVVNSSTIVITPTQAGIDNAVKSAMQVAT 163

Query: 242 KIMRDRIEELGITEALVQRQGEHAIRIELPGVQDPSQAKNVIGATASLAFY---EAKSPT 298
           +++R RI+E+G  E  +Q+QG + I +++PG+QDP   K ++G TA L F     + +P+
Sbjct: 164 EVIRKRIDEMGTREPTIQQQGANRIVVQVPGLQDPKALKALLGQTAKLEFKLVDMSANPS 223

Query: 299 D-----ARSYDDLILEDGN--GRPVILAKRPVL-SGEHIVNARAGVDNM-GMSEVNISLD 349
           +     A    +++    N  G P+I   R V+ SGE + +A+   D       V I  +
Sbjct: 224 EVAQGRAPVGSEVLPYPTNPAGPPMIAVHRQVMVSGEELTDAQQTYDQQTNEPNVTIRFN 283

Query: 350 HAGGKIMSDFSGKHIGKPMATVYREYKTNARGETVRSEKVISVATIQSQ-LGSQFRITGA 408
            +GG   +  + +++ +P A +                KV+S   I    LG    I+G+
Sbjct: 284 GSGGNKFAKVTSQNVNRPFAIIL-------------DGKVLSAPNINEPILGGSATISGS 330

Query: 409 GSMEEAQQLALLLRAGSLTAPVTIVEERTIGASLGEENIANGFAALALGMAMTLTFMALW 468
            ++E A QLA+ LR+G L     +VEERT+G  LG ++I  G  A  + +     FM + 
Sbjct: 331 FTVEGANQLAIALRSGKLPVNFVVVEERTVGPGLGADSIRAGLVASIVAVVAVAAFMFVS 390

Query: 469 YRRLGWVANVALLVNMACLLGLIALLPGAVLTLPGIAGLVLTVGMAVDTNVLIFERIRDK 528
           Y R G  AN+A+ +N+  +LG++ +L GA LTLPGIAG VLT+G AVD NVLI+ERIR++
Sbjct: 391 YGRFGMYANLAVAINVLVILGVMGIL-GATLTLPGIAGFVLTIGTAVDANVLIYERIREE 449

Query: 529 LSEGRNFAQAIDTGFDSAFSTILDANITTMITAVILYSIGNGPIQGFALTLGLGLLTSMF 588
              GR   QAI+ G+  A  TI +AN+T  I   I+ ++G+GP++GFA+ L +G+ TS+F
Sbjct: 450 RRRGRGVVQAIEFGYKEASRTIFEANVTHAIAGGIMLALGSGPVKGFAIVLLIGIATSVF 509

Query: 589 SGVFASRALINLVWGRDTR 607
           + V  +R L++  W R TR
Sbjct: 510 TAVTFTRVLVS-GWVRRTR 527