Pairwise Alignments

Query, 612 a.a., protein translocase subunit SecD from Vibrio cholerae E7946 ATCC 55056

Subject, 620 a.a., Sec Translocation Complex SecD subunit from Pseudomonas putida KT2440

 Score =  401 bits (1031), Expect = e-116
 Identities = 240/630 (38%), Positives = 368/630 (58%), Gaps = 47/630 (7%)

Query: 13  LINHYSAWKYVVLVTTIIILTLSAIPTWYGEQPSIQLQSKDATSVLR-NVPELTQLLN-- 69
           ++N Y  WKY ++V  +++  + + P  Y + P++Q+    A+S L+ N  +L ++    
Sbjct: 1   MLNKYPLWKYALIVLVLVVGFIYSAPNLYPDDPAVQISG--ASSALQVNQADLDRVSKAL 58

Query: 70  ---KQNIQADEITQQGDNTTLVFANETQQSQARNALDALVKEGDTITYSYVSVAPKWLGN 126
              K  ++   + ++G    +   N+  Q  A++ +   + +   +  +     P+WL N
Sbjct: 59  VDAKIAVKGASLGEKGSGL-IRLTNQEDQLPAKDVVRKALGDDYVVALNLAQTTPQWLRN 117

Query: 127 LGFSPIKLGLDLRGGVQFLLNVDVDKAFQEQRDSMMDAVKDSLRAERLR--------GVV 178
           LG SP+KLGLDL GGV FLL VD+DKA   +       VK  LR ER+R        G +
Sbjct: 118 LGASPMKLGLDLSGGVHFLLEVDMDKAMTARMKVYEGEVKTLLRKERVRYRSLPQQDGGI 177

Query: 179 VQAMGNDAFEVKTEQPQALSHVRKYLQENYRGWEI----RQGSDQLQVQPSQQNKSEFQT 234
           +    +DA     EQ +AL      +++N+  +++    R     L++  +Q   +E + 
Sbjct: 178 MLGFADDATR---EQARAL------IRKNFNDFDLTTTDRNELAVLRLALTQAKVAEIRE 228

Query: 235 ATIQQNLKIMRDRIEELGITEALVQRQGEHAIRIELPGVQDPSQAKNVIGATASLAFYEA 294
            +I+QNL  +R+R+ ELG+ E LVQRQG + I +ELPGVQD ++AK ++G TA+L F   
Sbjct: 229 YSIKQNLTTVRNRVNELGVAEPLVQRQGANRIVVELPGVQDTAEAKRILGKTANLEFRFG 288

Query: 295 KSPTDARSYDDLILEDGNGRPVILAKRPVLSGEHIVNARAGVDNMGMSEVNISLDHAGGK 354
             P  +++  ++      GR   + +  +++G+ + +A+A  D  G  +VNI LD  GG+
Sbjct: 289 AEPGASKATTEVFEFREGGRSAAVERGLIITGDQVTDAQASFDEHGRPQVNIRLDGHGGE 348

Query: 355 IMSDFSGKHIGKPMATVYREYKTNAR---------------GETVRSEKVISVATIQSQL 399
           +MS  +  ++G+ MA ++ E K   R                  V  +K+IS+ATIQS L
Sbjct: 349 LMSRATRSNVGRSMAVIFIEQKPVTRYVKQAVGGVEKDVAVQSFVEEKKIISLATIQSPL 408

Query: 400 GSQFRITGAGSMEEAQQLALLLRAGSLTAPVTIVEERTIGASLGEENIANGFAALALGMA 459
           GSQFRITG     E+ +LALLLRAG L AP+   EERTIG SLG +NI  G  A   GM 
Sbjct: 409 GSQFRITGLNGQGESSELALLLRAGGLAAPMYFAEERTIGPSLGADNITKGIDASLWGML 468

Query: 460 MTLTFMALWYRRLGWVANVALLVNMACLLGLIALLPGAVLTLPGIAGLVLTVGMAVDTNV 519
               F+   YR  G +A +AL  NM  LL L++LL GA LTLPGIAG+VLT+GMAVD NV
Sbjct: 469 FVSLFIIAIYRAFGVLATIALAGNMVLLLALMSLL-GATLTLPGIAGIVLTMGMAVDANV 527

Query: 520 LIFERIRDKLSEGRNFAQAIDTGFDSAFSTILDANITTMITAVILYSIGNGPIQGFALTL 579
           LIF RIR++++ G +  +AI  GF+ A+S I+DAN+TT++   IL+++G GP++GFA+T+
Sbjct: 528 LIFSRIREEIAAGMSVQRAIHEGFNRAYSAIVDANLTTLLVGGILFAMGTGPVKGFAVTM 587

Query: 580 GLGLLTSMFSGVFASRALINLV-WGRDTRR 608
            LG+ TSMF+ V  +RAL+NL   GRD ++
Sbjct: 588 SLGIFTSMFTAVMVTRALVNLTCGGRDIKK 617