Pairwise Alignments

Query, 612 a.a., protein translocase subunit SecD from Vibrio cholerae E7946 ATCC 55056

Subject, 522 a.a., protein translocase subunit SecD from Magnetospirillum magneticum AMB-1

 Score =  302 bits (774), Expect = 2e-86
 Identities = 187/498 (37%), Positives = 290/498 (58%), Gaps = 36/498 (7%)

Query: 121 PKWLGNLGFSPIKLGLDLRGGVQFLLNVDVDKAFQEQRDSMMDAVKDSLRAERLRGVVVQ 180
           P WL      P+ LGLDL+GG   LL VD    F+EQ  S+++ V+ +LR E+++   + 
Sbjct: 37  PHWL-----QPVSLGLDLQGGSYLLLEVDTAYVFREQLTSLVEGVRTTLRKEKIKYSDLG 91

Query: 181 AMGNDAFEVKTEQPQALSHVRKYLQENYRGWEIRQGSD-QLQVQPSQQNKSEFQTATIQQ 239
           A G D   V+  +    +  R++L++      I    D  + ++ S+Q     +TA I+Q
Sbjct: 92  ARG-DQVSVRIIEADERAKAREFLRKIDAEAAIETRDDGSMVLKYSEQAVKARKTAAIEQ 150

Query: 240 NLKIMRDRIEELGITEALVQRQGEHAIRIELPGVQDPSQAKNVIGATASLAFY------- 292
           +L+I+R RI+ELG  E  +QRQGE  I ++LPGV+DP + K ++G TA L F+       
Sbjct: 151 SLEIVRRRIDELGTREPSIQRQGEDRIVVQLPGVKDPDRIKALLGKTAKLTFHLLDDSTG 210

Query: 293 -----EAKSPTDARSYDDLILEDGNGRPVILAKRPVLSGEHIVNARAGVDNMGMSEVNIS 347
                + + P  +        E G     ++ KR  + G+ +V+++A     G   V+  
Sbjct: 211 ADEAQKGRVPPGSMLLPSAEKERGMPESYVVRKRIEVGGDMLVDSKATYSE-GRPVVSFR 269

Query: 348 LDHAGGKIMSDFSGKHIGKPMATVYREYKTNARGETVRSEKVISVATIQSQ-LGSQFRIT 406
              AG K   D + ++ GK +A V               EKVIS   I    LG    I+
Sbjct: 270 FSAAGAKKFGDATRENAGKFLAIVL-------------DEKVISAPRINEPILGGSGIIS 316

Query: 407 GAGSMEEAQQLALLLRAGSLTAPVTIVEERTIGASLGEENIANGFAALALGMAMTLTFMA 466
           G+ S+++AQ L+LLLRAG+L AP+ ++EERT+G  LG ++I  G  A  LG+A+ +  M 
Sbjct: 317 GSFSVQQAQDLSLLLRAGALPAPLQVLEERTVGPDLGADSIQAGAVASLLGLALVVVLMI 376

Query: 467 LWYRRLGWVANVALLVNMACLLGLIALLPGAVLTLPGIAGLVLTVGMAVDTNVLIFERIR 526
           + Y  LG +A++A+++N+  LL  ++ L GA LTLPGIAG+VLT+GMAVD NVLI+ER+R
Sbjct: 377 IVYGSLGALADLAMVLNLILLLASLSAL-GATLTLPGIAGIVLTMGMAVDANVLIYERMR 435

Query: 527 DKLSEGRNFAQAIDTGFDSAFSTILDANITTMITAVILYSIGNGPIQGFALTLGLGLLTS 586
           ++   GR+   AI  G+D AF TI DA++TT++ A +L+  G+GP++GFA+TL LGLL S
Sbjct: 436 EEQRNGRSIMSAIQAGYDRAFGTIFDAHVTTLVAAALLFQFGSGPVRGFAVTLTLGLLAS 495

Query: 587 MFSGVFASRALINLVWGR 604
           +F+ V  +R ++ + W R
Sbjct: 496 LFTAVLVNRIMV-VTWVR 512