Pairwise Alignments

Query, 612 a.a., protein translocase subunit SecD from Vibrio cholerae E7946 ATCC 55056

Subject, 323 a.a., Protein-export membrane protein SecF (TC 3.A.5.1.1) from Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868

 Score = 57.4 bits (137), Expect = 9e-13
 Identities = 61/269 (22%), Positives = 123/269 (45%), Gaps = 14/269 (5%)

Query: 334 AGVDNMGMSEVNISLDHAGGKIMSDFSGKHIGKPMAT-VYREYKTNARGETVRSEKVISV 392
           A +  MG+   N  LD  GG ++       + KP    V RE    A  E  + +   S 
Sbjct: 36  AAIVIMGVRGFNWGLDFTGGTVIEIT----LEKPAEMDVMREALQKAGYEEPQLQNFGSS 91

Query: 393 ATIQSQLGSQFRITGAGSMEEAQQLALLLRAGSLTAPVTIVEERTIGASLGEENIANGFA 452
             I  ++      TG G +  ++ + ++  A +  A V  +E   +G S+G +    G  
Sbjct: 92  HDIMVRMPPTEGETG-GQVLGSKVVTIINEATNQNAAVKRIE--FVGPSVGADLAQTGAM 148

Query: 453 ALALGMAMTLTFMALWYR-RLGWVANVALLVNMACLLGLIALLPGAVLTLPGIAGLVLTV 511
           AL + +   L ++   +  RL     +AL  ++   LG+++L     + L  +A L+  +
Sbjct: 149 ALLVALISILVYVGFRFEWRLAAGVVIALAHDVIITLGILSLFH-IEIDLTIVASLMSVI 207

Query: 512 GMAVDTNVLIFERIRD---KLSEGRNFAQAIDTGFDSAFSTILDANITTMITAVILYSIG 568
           G +++ ++++ +RIR+   K+  G  + +  +          L  + TT++  ++LY  G
Sbjct: 208 GYSLNDSIVVSDRIRENFRKIRRGTPY-EIFNVSLTQTLHRTLITSGTTLVVILMLYLFG 266

Query: 569 NGPIQGFALTLGLGLLTSMFSGVFASRAL 597
              ++GF+LT+ +G+     S ++ + AL
Sbjct: 267 GPVLEGFSLTMLIGVSIGTASSIYVASAL 295