Pairwise Alignments

Query, 612 a.a., protein translocase subunit SecD from Vibrio cholerae E7946 ATCC 55056

Subject, 604 a.a., Protein-export membrane protein SecD (TC 3.A.5.1.1) from Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868

 Score =  451 bits (1160), Expect = e-131
 Identities = 239/595 (40%), Positives = 372/595 (62%), Gaps = 15/595 (2%)

Query: 24  VLVTTIIILTLSAIPTWYGEQPSIQLQS-KDATSVLRNVPELTQLLNKQNIQADEITQQG 82
           +LV  II+  L A+P  YGE P++Q+   +   +  + + ++ + L ++ I A  +  + 
Sbjct: 1   MLVVVIIVGLLYALPNLYGEDPAVQITGVRGVAASEQTLIQVQKTLQEEKIPAKSVALEE 60

Query: 83  DNTTLVFANETQQSQARNALDALVKEGDTITYSYVSVAPKWLGNLGFSPIKLGLDLRGGV 142
                 F     Q +AR AL +++ +   +  +     P+WL  +   P+KLGLDLRGGV
Sbjct: 61  GAILARFDTTDTQLRAREALMSVLGDKYVVALNLAPATPRWLAAIHADPMKLGLDLRGGV 120

Query: 143 QFLLNVDVDKAFQEQRDSMMDAVKDSLRAERLRGVVVQAMGNDAFEVKTEQPQALSHVRK 202
            FL+ VD+D A  + ++  +D+++  LR + +    V+   N    +     +A      
Sbjct: 121 HFLMEVDIDTALGKLQEQNIDSLRSDLREKGIPYTTVRKENNYGLSITFRDSKARDEAIA 180

Query: 203 YLQENYRGWEIR-QGSDQLQVQPSQQNKSEFQTATIQQNLKIMRDRIEELGITEALVQRQ 261
           YL   +R   I  Q  +QL+   +    SE +   +QQN+ I+R+R+ +LG+ E +VQRQ
Sbjct: 181 YLTPRHRDLVISSQSGNQLRAVMTDARLSEAREYAVQQNINILRNRVNQLGVAEPVVQRQ 240

Query: 262 GEHAIRIELPGVQDPSQAKNVIGATASLAFYEAKSPTDARSY-------DDLILEDGNGR 314
           G   I +ELPG+QD ++AK ++GATA+L F    +  D  +        D  + +   G+
Sbjct: 241 GADRIVVELPGIQDTARAKEILGATATLEFRLVNTNVDQAAAAAGRVPGDSEVKQTREGQ 300

Query: 315 PVILAKRPVLSGEHIVNARAGVDNMGMSEVNISLDHAGGKIMSDFSGKHIGKPMATVYRE 374
           PV+L KR +L+G+HI ++ +  D     +VNISLD AGG IMS+F+  +IGKPMAT++ E
Sbjct: 301 PVVLYKRVILTGDHITDSTSSQDEYNQPQVNISLDSAGGNIMSNFTKDNIGKPMATLFVE 360

Query: 375 YK------TNARGETVRSEKVISVATIQSQLGSQFRITGAGSMEEAQQLALLLRAGSLTA 428
           YK       N R   V+ E+VI++A IQS+LG+ FRITG  +  EA+QL+LLLRAG+L A
Sbjct: 361 YKDSGKKDANGRAVLVKQEEVINIANIQSRLGNSFRITGISNPNEARQLSLLLRAGALIA 420

Query: 429 PVTIVEERTIGASLGEENIANGFAALALGMAMTLTFMALWYRRLGWVANVALLVNMACLL 488
           P+ IVEERTIG +LG +NI  G  A   G+ +++ FM  +Y++ G +A  AL+ N+  ++
Sbjct: 421 PIQIVEERTIGPTLGMQNIKQGLEACLAGLVVSILFMIFFYKKFGLIATSALVANLVLIV 480

Query: 489 GLIALLPGAVLTLPGIAGLVLTVGMAVDTNVLIFERIRDKLSEGRNFAQAIDTGFDSAFS 548
           G+++LLPGA L++PGIAG+VLT+ +AVD NVLI ERI+++LS GR   QAI+ G+  AFS
Sbjct: 481 GIMSLLPGATLSMPGIAGIVLTLAVAVDANVLINERIKEELSNGRTVQQAINEGYAGAFS 540

Query: 549 TILDANITTMITAVILYSIGNGPIQGFALTLGLGLLTSMFSGVFASRALINLVWG 603
           +I DANITT+I  +ILY++G G I+GFA+T G+G+ TSMF+ +  +RA++NL++G
Sbjct: 541 SIFDANITTLIKVIILYAVGTGAIKGFAITTGIGVATSMFTAIIGTRAIVNLLYG 595